Wall clock time and date at job start Mon Mar 30 2020 02:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30721 * 1 3 3 Si 1.86800 * 119.99677 * 2 1 4 4 H 1.48498 * 109.47531 * 89.99545 * 3 2 1 5 5 H 1.48504 * 109.46784 * 209.99609 * 3 2 1 6 6 H 1.48501 * 109.47286 * 329.99307 * 3 2 1 7 7 C 1.40168 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00238 * 17.14432 * 7 2 1 9 9 C 1.40724 * 119.99901 * 197.13657 * 7 2 1 10 10 C 1.41006 * 121.05343 * 28.42857 * 9 7 2 11 11 N 1.31211 * 120.39289 * 180.02562 * 10 9 7 12 12 C 1.32129 * 123.04103 * 359.97438 * 11 10 9 13 13 C 1.37863 * 122.15269 * 359.97438 * 12 11 10 14 14 C 1.39964 * 119.16637 * 359.75347 * 13 12 11 15 15 C 1.47201 * 121.32177 * 180.25459 * 14 13 12 16 16 C 1.37276 * 126.97184 * 309.96806 * 15 14 13 17 17 C 1.40924 * 103.83630 * 179.97438 * 16 15 14 18 18 N 1.30296 * 106.64808 * 0.34017 * 17 16 15 19 19 O 1.20890 * 112.03086 * 359.77608 * 18 17 16 20 20 H 0.96995 * 119.99741 * 175.48042 * 1 2 3 21 21 H 1.07998 * 119.80393 * 0.02562 * 10 9 7 22 22 H 1.07998 * 118.92161 * 180.02562 * 12 11 10 23 23 H 1.07996 * 120.41545 * 180.02562 * 13 12 11 24 24 H 1.07997 * 128.08187 * 0.03330 * 16 15 14 25 25 H 1.08001 * 126.67638 * 180.11514 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.4885 2.0466 1.4000 5 1 3.5387 1.4402 -0.7000 6 1 1.4386 2.6527 -0.7002 7 6 2.0081 -1.2139 0.0005 8 1 1.5041 -2.1285 -0.2747 9 6 3.3685 -1.2407 0.3597 10 6 3.9044 -0.2885 1.2509 11 7 5.1749 -0.3253 1.5765 12 6 6.0134 -1.2312 1.1052 13 6 5.6124 -2.2160 0.2277 14 6 4.2734 -2.2654 -0.1766 15 6 3.7927 -3.2996 -1.1072 16 6 4.3498 -3.6495 -2.3121 17 6 3.5095 -4.6766 -2.7864 18 7 2.5777 -4.8401 -1.8905 19 8 2.7136 -4.0895 -0.9526 20 1 -0.4849 -0.8374 -0.0662 21 1 3.2653 0.4757 1.6680 22 1 7.0465 -1.1997 1.4184 23 1 6.3217 -2.9428 -0.1397 24 1 5.2276 -3.2350 -2.7855 25 1 3.6151 -5.2198 -3.7138 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259674524.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:14 Heat of formation + Delta-G solvation = 79.548023 kcal Electronic energy + Delta-G solvation = -13734.099651 eV Core-core repulsion = 11294.422866 eV Total energy + Delta-G solvation = -2439.676785 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.12422 -38.48063 -34.34898 -33.38789 -32.59785 -30.67624 -29.45188 -25.52955 -23.27816 -22.66858 -21.53717 -20.41479 -18.65918 -17.41430 -16.84852 -15.39681 -15.15153 -14.57254 -14.25913 -13.83807 -13.23737 -12.89227 -12.57519 -12.39054 -12.04542 -11.27791 -11.00204 -10.83771 -10.35318 -10.07299 -9.91030 -9.45868 -9.30683 -8.36595 -8.20347 -8.06978 -7.63876 -4.93131 1.64886 2.32868 2.50949 2.90155 3.04555 3.19117 3.36623 3.74096 3.86064 4.32449 4.83438 5.07545 5.33907 5.54282 5.68281 5.83747 6.03246 6.10673 6.23113 6.39135 6.55342 6.69042 7.06808 7.13468 7.20015 7.41730 7.93315 8.00450 8.28326 8.84863 9.24528 9.59039 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.026108 B = 0.013764 C = 0.009881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.223509 B = 2033.769692 C = 2833.071102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.040 3.960 3 Si 1.068 2.932 4 H -0.265 1.265 5 H -0.261 1.261 6 H -0.281 1.281 7 C -0.464 4.464 8 H 0.091 0.909 9 C 0.068 3.932 10 C -0.022 4.022 11 N -0.444 5.444 12 C -0.059 4.059 13 C -0.076 4.076 14 C -0.156 4.156 15 C 0.091 3.909 16 C -0.266 4.266 17 C -0.013 4.013 18 N -0.390 5.390 19 O 0.095 5.905 20 H 0.295 0.705 21 H 0.141 0.859 22 H 0.129 0.871 23 H 0.110 0.890 24 H 0.164 0.836 25 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.608 -1.901 -3.007 6.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.184 4.184 3 Si 0.893 3.107 4 H -0.191 1.191 5 H -0.185 1.185 6 H -0.208 1.208 7 C -0.492 4.492 8 H 0.109 0.891 9 C 0.062 3.938 10 C -0.189 4.189 11 N -0.152 5.152 12 C -0.211 4.211 13 C -0.096 4.096 14 C -0.164 4.164 15 C 0.027 3.973 16 C -0.288 4.288 17 C -0.190 4.190 18 N -0.096 5.096 19 O 0.031 5.969 20 H 0.107 0.893 21 H 0.158 0.842 22 H 0.147 0.853 23 H 0.128 0.872 24 H 0.181 0.819 25 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.577 -0.571 -2.314 5.160 hybrid contribution 0.414 -2.193 -1.085 2.482 sum 4.991 -2.764 -3.398 6.641 Atomic orbital electron populations 1.70469 1.08109 1.33947 1.27154 1.27598 0.95665 1.04809 0.90368 0.83670 0.75624 0.72624 0.78826 1.19124 1.18491 1.20762 1.20884 0.94359 0.97461 1.36464 0.89093 1.19638 0.93051 0.91111 0.90041 1.22643 0.91824 1.02570 1.01813 1.66601 1.04314 1.22154 1.22091 1.21425 0.98559 0.96853 1.04270 1.21556 0.93673 0.97984 0.96391 1.18725 0.93097 0.99200 1.05393 1.22493 0.86746 0.92581 0.95434 1.22595 1.05889 1.03564 0.96786 1.24698 0.93472 0.99923 1.00949 1.73763 1.23256 1.13832 0.98744 1.84982 1.40024 1.36403 1.35478 0.89324 0.84168 0.85327 0.87160 0.81857 0.80070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.30 13.65 55.56 0.76 -18.54 15 2 C 0.04 0.97 5.44 -17.30 -0.09 0.88 15 3 Si 1.07 22.53 24.90 -169.99 -4.23 18.30 15 4 H -0.26 -5.27 6.45 56.52 0.36 -4.91 15 5 H -0.26 -5.58 7.00 56.52 0.40 -5.19 15 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 7 C -0.46 -11.74 8.99 -37.92 -0.34 -12.08 15 8 H 0.09 2.42 6.75 -52.49 -0.35 2.07 15 9 C 0.07 1.65 5.32 -104.43 -0.56 1.10 15 10 C -0.02 -0.53 8.49 -16.77 -0.14 -0.68 15 11 N -0.44 -10.20 10.26 -12.70 -0.13 -10.33 15 12 C -0.06 -1.22 11.11 -17.56 -0.20 -1.42 15 13 C -0.08 -1.52 9.86 -39.07 -0.39 -1.91 15 14 C -0.16 -3.52 6.05 -102.13 -0.62 -4.14 15 15 C 0.09 1.94 6.34 -36.29 -0.23 1.71 15 16 C -0.27 -4.80 11.11 -38.92 -0.43 -5.23 15 17 C -0.01 -0.23 12.14 -17.19 -0.21 -0.43 15 18 N -0.39 -8.03 12.05 30.47 0.37 -7.66 15 19 O 0.09 2.12 10.08 15.61 0.16 2.28 15 20 H 0.29 7.16 8.72 -40.82 -0.36 6.80 15 21 H 0.14 3.22 4.36 -52.49 -0.23 2.99 15 22 H 0.13 2.23 8.06 -52.49 -0.42 1.81 15 23 H 0.11 1.86 8.06 -52.49 -0.42 1.43 15 24 H 0.16 2.48 8.06 -52.49 -0.42 2.06 15 25 H 0.18 2.32 8.06 -52.49 -0.42 1.90 15 LS Contribution 228.41 15.07 3.44 3.44 Total: -1.00 -26.74 228.41 -4.31 -31.05 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -1.47 Total: 3.66 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -3.20 Total: -22.20 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 1.00 Total: -36.52 kcal Atomic # 8 Polarization: 2.12 SS G_CDS: 0.16 Total: 2.28 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.23 Total: 18.30 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -26.74 -4.31 -31.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674524.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.597 kcal (2) G-P(sol) polarization free energy of solvation -26.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds