Wall clock time and date at job start Mon Mar 30 2020 02:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30621 * 1 3 3 Si 1.86804 * 119.99711 * 2 1 4 4 H 1.48497 * 109.47305 * 274.98253 * 3 2 1 5 5 H 1.48498 * 109.47059 * 34.98647 * 3 2 1 6 6 H 1.48502 * 109.46998 * 154.98664 * 3 2 1 7 7 C 1.40370 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99324 * 186.06245 * 7 2 1 9 9 C 1.39345 * 119.99917 * 6.06823 * 7 2 1 10 10 N 1.33068 * 125.53825 * 354.17243 * 9 7 2 11 11 C 1.32491 * 108.98239 * 179.74719 * 10 9 7 12 12 C 1.38768 * 107.64730 * 0.44201 * 11 10 9 13 13 C 1.47160 * 126.56760 * 179.83257 * 12 11 10 14 14 C 1.40416 * 120.59308 * 179.70895 * 13 12 11 15 15 C 1.38217 * 118.25607 * 179.97438 * 14 13 12 16 16 C 1.38460 * 119.35324 * 359.97438 * 15 14 13 17 17 N 1.31971 * 121.16438 * 0.02562 * 16 15 14 18 18 C 1.31631 * 121.91617 * 359.67445 * 17 16 15 19 19 O 1.34982 * 125.52967 * 174.20839 * 9 7 2 20 20 H 0.96994 * 119.99884 * 359.97438 * 1 2 3 21 21 H 1.07997 * 126.17222 * 180.29336 * 11 10 9 22 22 H 1.08006 * 120.87559 * 0.02562 * 14 13 12 23 23 H 1.08003 * 120.32633 * 180.02562 * 15 14 13 24 24 H 1.07993 * 119.41843 * 179.97438 * 16 15 14 25 25 H 1.07997 * 119.74523 * 180.29101 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3823 2.1073 -1.3947 5 1 1.4942 2.6200 0.8028 6 1 3.5864 1.4122 0.5920 7 6 2.0081 -1.2156 -0.0005 8 1 3.0836 -1.2182 0.0982 9 6 1.3172 -2.4190 -0.1287 10 7 -0.0066 -2.5526 -0.1471 11 6 -0.3084 -3.8350 -0.2877 12 6 0.8833 -4.5431 -0.3511 13 6 1.0308 -5.9995 -0.5021 14 6 2.3050 -6.5867 -0.5583 15 6 2.3873 -7.9591 -0.7003 16 6 1.2230 -8.7041 -0.7814 17 7 0.0376 -8.1268 -0.7259 18 6 -0.0966 -6.8249 -0.5855 19 8 1.8822 -3.6384 -0.2535 20 1 -0.4850 0.8400 0.0004 21 1 -1.3025 -4.2538 -0.3408 22 1 3.1974 -5.9820 -0.4914 23 1 3.3504 -8.4458 -0.7467 24 1 1.2861 -9.7764 -0.8928 25 1 -1.0840 -6.3899 -0.5395 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259682193.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:51 Heat of formation + Delta-G solvation = 40.311947 kcal Electronic energy + Delta-G solvation = -13210.742069 eV Core-core repulsion = 10769.363879 eV Total energy + Delta-G solvation = -2441.378189 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.10032 -39.24287 -34.22461 -32.77811 -32.27507 -31.26834 -28.74446 -25.66670 -23.16042 -22.65906 -20.78735 -20.09278 -17.71081 -16.73421 -15.82982 -15.43215 -15.36416 -14.81589 -14.28548 -13.28902 -13.27855 -12.97921 -12.60547 -12.15408 -11.87585 -11.52687 -11.09720 -10.88301 -10.55981 -9.99774 -9.68913 -9.36293 -9.08489 -8.94756 -8.49718 -7.20021 -6.99602 -4.82277 1.33492 1.74486 2.77240 2.90420 2.96195 3.20185 3.64505 4.09795 4.39303 4.52307 4.93829 5.07764 5.28200 5.48103 5.52458 5.71857 5.89062 6.14248 6.34805 6.46778 6.63554 6.70204 6.81530 7.19336 7.44269 7.72083 7.86748 8.19629 8.44433 8.45279 9.65427 9.91958 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.078590 B = 0.006568 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.192716 B = 4262.233208 C = 4605.498160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.070 3.930 3 Si 0.933 3.067 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.411 4.411 8 H 0.099 0.901 9 C 0.335 3.665 10 N -0.531 5.531 11 C 0.062 3.938 12 C -0.200 4.200 13 C 0.021 3.979 14 C -0.111 4.111 15 C -0.154 4.154 16 C 0.039 3.961 17 N -0.472 5.472 18 C 0.069 3.931 19 O -0.241 6.241 20 H 0.285 0.715 21 H 0.157 0.843 22 H 0.129 0.871 23 H 0.125 0.875 24 H 0.145 0.855 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 -4.762 -0.662 5.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.158 4.158 3 Si 0.756 3.244 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.444 4.444 8 H 0.117 0.883 9 C 0.158 3.842 10 N -0.258 5.258 11 C -0.093 4.093 12 C -0.254 4.254 13 C 0.018 3.982 14 C -0.137 4.137 15 C -0.174 4.174 16 C -0.117 4.117 17 N -0.180 5.180 18 C -0.090 4.090 19 O -0.139 6.139 20 H 0.097 0.903 21 H 0.174 0.826 22 H 0.147 0.853 23 H 0.143 0.857 24 H 0.162 0.838 25 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.622 -4.539 -0.645 4.864 hybrid contribution 1.568 0.590 -0.022 1.676 sum 3.191 -3.949 -0.667 5.121 Atomic orbital electron populations 1.69974 1.07473 1.29548 1.26057 1.26028 0.95145 1.01339 0.93284 0.85881 0.80199 0.78842 0.79512 1.18937 1.19563 1.18044 1.18354 0.95528 0.86309 1.44183 0.88299 1.22266 0.86875 0.83474 0.91600 1.71381 1.11779 1.15130 1.27553 1.23777 0.96954 0.91138 0.97437 1.20615 0.87159 0.88460 1.29181 1.18708 0.94105 0.89383 0.96032 1.21586 0.97399 0.94585 1.00102 1.21891 0.99627 0.94471 1.01425 1.22428 0.87806 0.99737 1.01753 1.67465 1.27367 1.11970 1.11156 1.22542 0.97772 0.88325 1.00382 1.84489 1.35934 1.17084 1.76351 0.90327 0.82602 0.85348 0.85676 0.83806 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.96 11.88 55.57 0.66 -17.30 15 2 C 0.07 1.68 5.49 -17.26 -0.09 1.58 15 3 Si 0.93 17.24 29.57 -169.99 -5.03 12.21 15 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 6 H -0.26 -4.63 7.11 56.52 0.40 -4.22 15 7 C -0.41 -10.64 9.43 -38.37 -0.36 -11.00 15 8 H 0.10 2.35 7.86 -52.48 -0.41 1.94 15 9 C 0.33 9.25 7.69 -16.60 -0.13 9.13 15 10 N -0.53 -14.67 9.37 -12.91 -0.12 -14.79 15 11 C 0.06 1.48 11.37 -17.07 -0.19 1.29 15 12 C -0.20 -4.79 7.14 -35.77 -0.26 -5.04 15 13 C 0.02 0.43 5.89 -104.81 -0.62 -0.19 15 14 C -0.11 -2.04 9.88 -38.77 -0.38 -2.42 15 15 C -0.15 -2.36 10.09 -39.51 -0.40 -2.76 15 16 C 0.04 0.61 11.17 -17.41 -0.19 0.42 15 17 N -0.47 -8.41 10.34 -12.77 -0.13 -8.55 15 18 C 0.07 1.28 10.77 -16.99 -0.18 1.10 15 19 O -0.24 -6.36 10.71 1.50 0.02 -6.35 15 20 H 0.29 6.40 8.29 -40.82 -0.34 6.06 15 21 H 0.16 3.13 7.37 -52.49 -0.39 2.75 15 22 H 0.13 2.32 8.02 -52.48 -0.42 1.90 15 23 H 0.13 1.48 8.06 -52.48 -0.42 1.06 15 24 H 0.14 1.74 8.06 -52.49 -0.42 1.32 15 25 H 0.15 2.53 7.09 -52.49 -0.37 2.16 15 LS Contribution 236.88 15.07 3.57 3.57 Total: -1.00 -29.58 236.88 -5.42 -34.99 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -1.57 Total: 4.10 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.81 Total: -7.90 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.41 Total: -40.64 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: 0.02 Total: -6.35 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.58 -5.42 -34.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259682193.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.305 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds