Wall clock time and date at job start Mon Mar 30 2020 02:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86800 * 120.00385 * 2 1 4 4 H 1.48503 * 109.46654 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47325 * 119.99820 * 3 2 1 6 6 H 1.48500 * 109.47304 * 240.00247 * 3 2 1 7 7 C 1.40108 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00078 * 2.41191 * 7 2 1 9 9 C 1.41507 * 120.00105 * 182.40188 * 7 2 1 10 10 C 1.40639 * 120.61256 * 186.95104 * 9 7 2 11 11 C 1.39856 * 118.01135 * 179.97438 * 10 9 7 12 12 C 1.47581 * 120.51847 * 180.02562 * 11 10 9 13 13 C 1.36329 * 126.78645 * 180.02562 * 12 11 10 14 14 N 1.33610 * 107.84214 * 179.97438 * 13 12 11 15 15 C 1.30703 * 109.59048 * 359.97438 * 14 13 12 16 16 N 1.34867 * 109.05720 * 359.76814 * 15 14 13 17 17 H 0.97003 * 126.46103 * 180.24055 * 16 15 14 18 18 N 1.33515 * 118.96483 * 0.02562 * 11 10 9 19 19 C 1.31834 * 121.13548 * 359.97438 * 18 11 10 20 20 N 1.31441 * 122.23297 * 359.74097 * 19 18 11 21 21 H 0.96997 * 120.00125 * 174.82912 * 1 2 3 22 22 H 1.08004 * 120.99722 * 0.02562 * 10 9 7 23 23 H 1.07994 * 126.08338 * 359.96144 * 13 12 11 24 24 H 1.08005 * 125.47243 * 180.02562 * 15 14 13 25 25 H 1.08000 * 118.88692 * 180.02562 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 1.2758 2.7464 0.0006 5 1 3.0946 1.6963 1.2125 6 1 3.0946 1.6964 -1.2125 7 6 2.0073 -1.2134 0.0005 8 1 1.4680 -2.1483 -0.0384 9 6 3.4214 -1.2139 0.0519 10 6 4.1429 -2.4124 -0.0931 11 6 5.5388 -2.3501 -0.0340 12 6 6.3505 -3.5739 -0.1799 13 6 7.7105 -3.6608 -0.1429 14 7 8.0436 -4.9433 -0.3141 15 6 6.9612 -5.6621 -0.4556 16 7 5.8833 -4.8557 -0.3739 17 1 4.9543 -5.1266 -0.4414 18 7 6.1256 -1.1660 0.1566 19 6 5.4124 -0.0651 0.2880 20 7 4.0991 -0.0699 0.2344 21 1 -0.4850 -0.8366 -0.0757 22 1 3.6342 -3.3528 -0.2464 23 1 8.3967 -2.8390 -0.0008 24 1 6.9342 -6.7309 -0.6088 25 1 5.9248 0.8734 0.4403 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259729147.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:03 Heat of formation + Delta-G solvation = 58.676079 kcal Electronic energy + Delta-G solvation = -13370.006532 eV Core-core repulsion = 10961.717422 eV Total energy + Delta-G solvation = -2408.289110 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.96925 -41.01382 -36.29249 -34.45264 -33.73452 -32.74790 -30.04885 -28.20546 -25.11052 -23.93605 -22.46960 -21.75182 -20.72745 -19.26863 -17.71850 -17.09746 -16.29556 -16.12649 -15.57928 -15.21353 -15.14669 -14.80148 -14.42845 -14.14977 -14.08581 -13.03094 -12.34930 -11.86302 -11.53179 -11.44235 -11.24551 -11.02115 -10.91785 -10.48812 -9.72227 -9.26792 -9.17680 -7.13194 -0.05294 0.54455 1.36361 1.62279 1.76507 2.01894 2.05200 2.15967 2.44078 2.67148 3.41862 3.49620 3.71437 3.84714 4.01797 4.31764 4.43237 4.60771 4.78169 4.88124 5.10606 5.23505 5.48281 5.64833 5.78253 6.08812 6.40624 6.44699 6.61843 6.99615 7.65213 7.82696 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.057214 B = 0.008168 C = 0.007181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.269459 B = 3427.250769 C = 3898.500730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.020 3.980 3 Si 1.183 2.817 4 H -0.327 1.327 5 H -0.273 1.273 6 H -0.293 1.293 7 C -0.485 4.485 8 H 0.076 0.924 9 C 0.252 3.748 10 C -0.318 4.318 11 C 0.243 3.757 12 C -0.009 4.009 13 C 0.026 3.974 14 N -0.533 5.533 15 C 0.218 3.782 16 N -0.552 5.552 17 H 0.433 0.567 18 N -0.605 5.605 19 C 0.324 3.676 20 N -0.627 5.627 21 H 0.286 0.714 22 H 0.124 0.876 23 H 0.176 0.824 24 H 0.262 0.738 25 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.420 -7.331 -0.897 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.199 4.199 3 Si 1.015 2.985 4 H -0.260 1.260 5 H -0.200 1.200 6 H -0.221 1.221 7 C -0.520 4.520 8 H 0.094 0.906 9 C 0.126 3.874 10 C -0.344 4.344 11 C 0.106 3.894 12 C -0.124 4.124 13 C -0.126 4.126 14 N -0.253 5.253 15 C -0.065 4.065 16 N -0.156 5.156 17 H 0.274 0.726 18 N -0.328 5.328 19 C 0.034 3.966 20 N -0.354 5.354 21 H 0.097 0.903 22 H 0.142 0.858 23 H 0.193 0.807 24 H 0.278 0.722 25 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.372 -5.340 -0.713 9.956 hybrid contribution -2.044 -2.451 -0.202 3.198 sum 6.328 -7.791 -0.915 10.079 Atomic orbital electron populations 1.70639 1.08454 1.33197 1.30935 1.28585 0.95513 1.07938 0.87901 0.81467 0.70052 0.67586 0.79417 1.25966 1.20048 1.22135 1.20877 0.90725 0.96362 1.44008 0.90590 1.18901 0.94129 0.87995 0.86412 1.22342 0.94135 0.99610 1.18353 1.18821 0.89173 0.90456 0.90981 1.19142 0.94028 0.84422 1.14836 1.22583 0.92033 0.94848 1.03114 1.70212 1.30110 1.03437 1.21495 1.26037 0.79829 0.99826 1.00845 1.43249 1.11726 1.05956 1.54714 0.72612 1.68267 1.40346 0.98161 1.26038 1.24832 0.86551 0.96904 0.88299 1.67361 1.10852 1.29227 1.27999 0.90284 0.85828 0.80667 0.72234 0.77394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.46 13.65 21.85 0.30 -42.16 15 2 C 0.02 1.06 5.52 85.32 0.47 1.53 15 3 Si 1.18 54.64 25.57 68.60 1.75 56.39 15 4 H -0.33 -14.79 7.11 99.48 0.71 -14.08 15 5 H -0.27 -12.39 6.70 99.48 0.67 -11.72 15 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 15 7 C -0.49 -25.37 9.63 23.53 0.23 -25.15 15 8 H 0.08 3.96 8.05 -2.91 -0.02 3.93 15 9 C 0.25 12.56 6.41 40.17 0.26 12.82 15 10 C -0.32 -13.97 9.63 23.25 0.22 -13.74 15 11 C 0.24 10.01 6.79 41.75 0.28 10.30 15 12 C -0.01 -0.31 6.99 40.23 0.28 -0.02 15 13 C 0.03 0.85 11.65 83.98 0.98 1.83 15 14 N -0.53 -15.83 11.21 -199.44 -2.24 -18.07 15 15 C 0.22 4.74 13.02 180.26 2.35 7.09 15 16 N -0.55 -13.91 6.07 -187.62 -1.14 -15.05 15 17 H 0.43 8.67 8.30 -92.71 -0.77 7.90 15 18 N -0.60 -25.42 10.20 -189.57 -1.93 -27.35 15 19 C 0.32 13.61 12.26 180.98 2.22 15.83 15 20 N -0.63 -30.14 4.76 -193.77 -0.92 -31.06 15 21 H 0.29 14.34 8.72 -92.71 -0.81 13.53 15 22 H 0.12 4.81 7.40 -2.91 -0.02 4.78 15 23 H 0.18 5.70 8.06 -2.91 -0.02 5.68 15 24 H 0.26 2.52 8.06 -2.91 -0.02 2.49 15 25 H 0.21 6.91 8.06 -2.91 -0.02 6.89 15 Total: -1.00 -63.74 230.91 3.50 -60.25 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.39 Total: 6.58 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 7.29 Total: 10.48 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -5.93 Total: -133.69 kcal Atomic # 14 Polarization: 54.64 SS G_CDS: 1.75 Total: 56.39 kcal Total: -63.74 3.50 -60.25 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259729147.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.924 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds