Wall clock time and date at job start Mon Mar 30 2020 02:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86799 * 120.00351 * 2 1 4 4 H 1.48494 * 109.47330 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47175 * 300.00727 * 3 2 1 6 6 H 1.48500 * 109.47014 * 60.00179 * 3 2 1 7 7 C 1.40093 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00044 * 179.97438 * 7 2 1 9 9 C 1.40909 * 120.00043 * 359.97438 * 7 2 1 10 10 N 1.34037 * 119.59527 * 180.25265 * 9 7 2 11 11 C 1.31619 * 119.57284 * 180.30247 * 10 9 7 12 12 C 1.40706 * 118.82358 * 359.45561 * 11 10 9 13 13 C 1.47616 * 120.40397 * 180.29805 * 12 11 10 14 14 C 1.42058 * 126.61215 * 359.69280 * 13 12 11 15 15 C 1.34446 * 107.34449 * 179.83345 * 14 13 12 16 16 N 1.36599 * 108.87487 * 0.42781 * 15 14 13 17 17 H 0.96998 * 125.40232 * 179.71821 * 16 15 14 18 18 C 1.35716 * 109.18480 * 359.72990 * 16 15 14 19 19 N 1.33598 * 119.19374 * 0.27928 * 12 11 10 20 20 N 1.28762 * 120.34551 * 359.97438 * 19 12 11 21 21 H 0.97002 * 120.00048 * 359.97438 * 1 2 3 22 22 H 1.08002 * 120.59130 * 179.73637 * 11 10 9 23 23 H 1.08002 * 126.32506 * 359.97438 * 14 13 12 24 24 H 1.08002 * 125.56064 * 180.13908 * 15 14 13 25 25 H 1.08002 * 126.08791 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3463 -0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8824 2.3964 1.2125 7 6 2.0074 -1.2133 -0.0005 8 1 3.0874 -1.2133 -0.0010 9 6 1.3028 -2.4336 -0.0005 10 7 1.9811 -3.5896 0.0041 11 6 1.3226 -4.7292 -0.0020 12 6 -0.0842 -4.6998 -0.0015 13 6 -0.8577 -5.9570 -0.0015 14 6 -0.3305 -7.2761 -0.0081 15 6 -1.3734 -8.1246 -0.0019 16 7 -2.5319 -7.4009 -0.0013 17 1 -3.4274 -7.7737 -0.0011 18 6 -2.2310 -6.0775 -0.0011 19 7 -0.7113 -3.5201 -0.0006 20 7 -0.0354 -2.4241 0.0003 21 1 -0.4850 0.8401 0.0004 22 1 1.8526 -5.6702 -0.0027 23 1 0.7149 -7.5473 -0.0145 24 1 -1.3061 -9.2025 -0.0024 25 1 -2.9410 -5.2637 -0.0003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259763276.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:10 Heat of formation + Delta-G solvation = 106.312581 kcal Electronic energy + Delta-G solvation = -13238.204664 eV Core-core repulsion = 10831.981228 eV Total energy + Delta-G solvation = -2406.223436 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.43615 -39.19618 -34.15866 -32.90473 -31.91293 -29.65941 -28.30500 -26.12907 -23.76540 -22.61822 -20.15443 -19.30417 -18.12548 -17.80283 -16.50118 -15.17857 -14.42535 -13.89973 -13.73418 -13.29740 -13.22560 -12.82914 -12.40415 -11.61679 -11.40044 -11.39912 -11.07901 -10.42433 -10.15776 -10.09425 -9.68288 -9.55887 -8.95174 -8.06371 -7.33007 -7.28004 -6.74324 -4.82001 2.16439 2.58856 2.78405 3.00722 3.01449 3.08125 3.73219 3.77659 3.81021 4.64346 5.36272 5.57180 5.75272 5.75733 5.77878 5.88808 6.03854 6.28368 6.57271 6.66686 6.92565 7.12373 7.28452 7.54608 7.62256 7.98184 8.00887 8.34500 8.38982 9.01030 10.04298 10.65850 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.081326 B = 0.006776 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.210405 B = 4131.436344 C = 4465.802394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.058 3.942 3 Si 0.925 3.075 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.378 4.378 8 H 0.098 0.902 9 C 0.306 3.694 10 N -0.541 5.541 11 C 0.145 3.855 12 C -0.078 4.078 13 C -0.073 4.073 14 C -0.190 4.190 15 C -0.033 4.033 16 N -0.561 5.561 17 H 0.409 0.591 18 C -0.007 4.007 19 N -0.186 5.186 20 N -0.281 5.281 21 H 0.282 0.718 22 H 0.144 0.856 23 H 0.133 0.867 24 H 0.157 0.843 25 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -8.036 -0.018 8.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.170 4.170 3 Si 0.748 3.252 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.414 4.414 8 H 0.116 0.884 9 C 0.070 3.930 10 N -0.264 5.264 11 C -0.038 4.038 12 C -0.224 4.224 13 C -0.082 4.082 14 C -0.216 4.216 15 C -0.163 4.163 16 N -0.156 5.156 17 H 0.245 0.755 18 C -0.140 4.140 19 N -0.043 5.043 20 N -0.142 5.142 21 H 0.093 0.907 22 H 0.161 0.839 23 H 0.151 0.849 24 H 0.174 0.826 25 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.523 -6.902 -0.010 7.749 hybrid contribution 0.405 -0.400 -0.004 0.570 sum -3.118 -7.302 -0.014 7.940 Atomic orbital electron populations 1.70083 1.07379 1.29001 1.25761 1.26215 0.95154 1.01793 0.93816 0.85977 0.80721 0.79712 0.78821 1.17994 1.19465 1.19461 1.19330 0.95113 0.87531 1.39445 0.88425 1.21224 0.89058 0.91528 0.91142 1.69188 1.39980 0.98614 1.18573 1.23368 0.91655 0.96963 0.91808 1.20604 0.92768 0.93304 1.15762 1.18041 0.91378 0.90789 1.07978 1.20841 0.98183 0.91992 1.10589 1.21541 0.85083 0.96870 1.12796 1.41735 1.08016 1.06531 1.59338 0.75534 1.22279 0.96720 0.84663 1.10359 1.73712 1.32742 0.95252 1.02550 1.74927 1.06125 1.14099 1.19033 0.90663 0.83910 0.84923 0.82592 0.81479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.60 11.43 55.55 0.64 -17.96 15 2 C 0.06 1.47 5.50 -17.34 -0.10 1.37 15 3 Si 0.92 18.19 29.56 -169.99 -5.02 13.16 15 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 7 C -0.38 -10.34 9.36 -37.88 -0.35 -10.69 15 8 H 0.10 2.52 7.85 -52.48 -0.41 2.11 15 9 C 0.31 8.90 7.41 -157.73 -1.17 7.73 15 10 N -0.54 -14.62 10.45 -12.25 -0.13 -14.75 15 11 C 0.15 3.47 10.87 -16.71 -0.18 3.29 15 12 C -0.08 -1.89 6.86 -82.34 -0.56 -2.45 15 13 C -0.07 -1.47 6.14 -104.75 -0.64 -2.11 15 14 C -0.19 -3.13 10.27 -39.46 -0.41 -3.54 15 15 C -0.03 -0.44 11.88 -16.77 -0.20 -0.64 15 16 N -0.56 -7.37 6.03 -12.32 -0.07 -7.44 15 17 H 0.41 3.70 8.96 -40.82 -0.37 3.34 15 18 C -0.01 -0.13 11.79 -15.97 -0.19 -0.31 15 19 N -0.19 -5.10 11.42 33.52 0.38 -4.72 15 20 N -0.28 -8.32 9.05 30.80 0.28 -8.04 15 21 H 0.28 6.62 8.29 -40.82 -0.34 6.28 15 22 H 0.14 2.80 7.21 -52.49 -0.38 2.42 15 23 H 0.13 1.95 7.47 -52.49 -0.39 1.56 15 24 H 0.16 1.49 8.06 -52.49 -0.42 1.06 15 25 H 0.17 2.82 8.06 -52.49 -0.42 2.39 15 LS Contribution 235.24 15.07 3.54 3.54 Total: -1.00 -32.78 235.24 -5.71 -38.49 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -1.53 Total: 5.07 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -3.80 Total: -7.36 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 1.09 Total: -52.91 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.02 Total: 13.16 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.78 -5.71 -38.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763276.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.803 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds