Wall clock time and date at job start Mon Mar 30 2020 02:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99662 * 2 1 4 4 H 1.48499 * 109.46617 * 240.00518 * 3 2 1 5 5 H 1.48496 * 109.46965 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47166 * 120.00509 * 3 2 1 7 7 C 1.37875 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99864 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.87410 * 300.69881 * 9 7 2 11 11 C 1.51828 * 110.98959 * 64.54657 * 9 7 2 12 12 C 1.37662 * 132.15509 * 283.30593 * 11 9 7 13 13 C 1.38349 * 120.00394 * 180.25938 * 12 11 9 14 14 C 1.38298 * 119.76142 * 0.05095 * 13 12 11 15 15 C 1.37937 * 120.35751 * 359.90421 * 14 13 12 16 16 C 1.39009 * 107.06302 * 103.45103 * 11 9 7 17 17 O 1.36376 * 111.37799 * 359.53539 * 16 11 9 18 18 C 1.42778 * 109.05071 * 17.19144 * 17 16 11 19 19 C 1.52042 * 122.64000 * 117.72602 * 18 17 16 20 20 C 1.52119 * 122.44506 * 191.09639 * 18 17 16 21 21 H 0.96997 * 120.00390 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.98630 * 0.29059 * 12 11 9 23 23 H 1.07996 * 120.12341 * 180.02562 * 13 12 11 24 24 H 1.08002 * 119.82071 * 179.97438 * 14 13 12 25 25 H 1.08003 * 119.87924 * 180.02562 * 15 14 13 26 26 H 1.09009 * 117.51595 * 219.11745 * 19 18 17 27 27 H 1.09004 * 117.52349 * 4.25096 * 19 18 17 28 28 H 1.08999 * 117.52732 * 355.41769 * 20 18 17 29 29 H 1.08998 * 117.52061 * 140.59337 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 1 0.6070 -2.5749 0.8778 11 6 0.4512 -2.6664 -1.2778 12 6 -0.7338 -2.1116 -1.7057 13 6 -1.2500 -2.4521 -2.9434 14 6 -0.5720 -3.3511 -3.7462 15 6 0.6161 -3.9078 -3.3204 16 6 1.1437 -3.5688 -2.0768 17 8 2.2906 -3.9904 -1.4714 18 6 2.2177 -3.6935 -0.0767 19 6 2.2436 -4.7728 0.9939 20 6 3.4222 -3.8057 0.8456 21 1 -0.4850 0.8400 0.0004 22 1 -1.2602 -1.4102 -1.0753 23 1 -2.1793 -2.0177 -3.2812 24 1 -0.9742 -3.6179 -4.7124 25 1 1.1394 -4.6088 -3.9538 26 1 1.5902 -4.6421 1.8566 27 1 2.3926 -5.8022 0.6679 28 1 4.3463 -4.1990 0.4219 29 1 3.5439 -3.0388 1.6106 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259781670.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:39 Heat of formation + Delta-G solvation = 10.587918 kcal Electronic energy + Delta-G solvation = -14324.103543 eV Core-core repulsion = 11984.976766 eV Total energy + Delta-G solvation = -2339.126777 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.89464 -38.51593 -36.28180 -35.08383 -32.27569 -30.78142 -28.92980 -25.87125 -23.45623 -23.09783 -22.22932 -21.42114 -18.56982 -17.77693 -17.31713 -16.64743 -16.33533 -15.87816 -15.25900 -14.76242 -14.36357 -14.25194 -13.81040 -13.34879 -12.91508 -12.78052 -12.64677 -12.40608 -12.37220 -12.00460 -11.83198 -11.34317 -11.11153 -10.63746 -10.58212 -9.46137 -8.79151 -8.12660 -6.29245 0.67413 0.75982 1.39336 1.41127 1.48010 2.32472 2.37634 2.90484 3.09355 3.18603 3.68827 4.08326 4.12395 4.25319 4.41816 4.50218 4.61229 4.68644 4.78481 4.91360 4.94010 5.09503 5.22929 5.33348 5.52823 5.63838 5.68937 5.87732 6.02293 6.12844 6.15260 6.53084 6.75761 7.36574 8.88285 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.022538 B = 0.015143 C = 0.010316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.051717 B = 1848.602259 C = 2713.507696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.023 3.977 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.092 3.908 10 H 0.023 0.977 11 C -0.136 4.136 12 C -0.079 4.079 13 C -0.165 4.165 14 C -0.102 4.102 15 C -0.157 4.157 16 C 0.056 3.944 17 O -0.293 6.293 18 C 0.005 3.995 19 C -0.167 4.167 20 C -0.136 4.136 21 H 0.264 0.736 22 H 0.127 0.873 23 H 0.141 0.859 24 H 0.162 0.838 25 H 0.138 0.862 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 -5.945 -2.522 6.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.781 3.219 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.074 0.926 9 C 0.074 3.926 10 H 0.041 0.959 11 C -0.137 4.137 12 C -0.097 4.097 13 C -0.183 4.183 14 C -0.120 4.120 15 C -0.176 4.176 16 C 0.012 3.988 17 O -0.208 6.208 18 C -0.033 4.033 19 C -0.204 4.204 20 C -0.172 4.172 21 H 0.074 0.926 22 H 0.145 0.855 23 H 0.159 0.841 24 H 0.179 0.821 25 H 0.156 0.844 26 H 0.126 0.874 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.232 -5.928 -2.594 6.475 hybrid contribution 0.363 1.167 0.188 1.236 sum 0.595 -4.761 -2.406 5.368 Atomic orbital electron populations 1.69950 1.06860 1.27426 1.49388 1.25671 0.95811 1.02079 0.94250 0.85644 0.78505 0.79039 0.78674 1.20641 1.20453 1.19093 1.21093 0.92770 0.90345 1.51914 0.92557 1.18235 0.90859 0.91878 0.91672 0.95936 1.21449 0.96110 0.96136 0.99995 1.20962 0.94893 0.97121 0.96750 1.21381 1.01732 1.00744 0.94453 1.21056 0.93727 0.96754 1.00423 1.20409 0.98200 1.04929 0.94035 1.20107 0.87132 0.95803 0.95802 1.86355 1.35110 1.78836 1.20501 1.22580 1.03961 0.98111 0.78672 1.23461 1.01454 0.96105 0.99388 1.23069 0.92800 1.01678 0.99691 0.92643 0.85507 0.84089 0.82079 0.84400 0.87365 0.86839 0.87117 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.99 10.19 21.45 0.22 -49.77 15 2 C 0.02 1.24 5.35 84.65 0.45 1.69 15 3 Si 0.96 43.50 29.54 68.60 2.03 45.52 15 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 7 C -0.52 -29.16 8.38 25.60 0.21 -28.95 15 8 H 0.06 3.12 7.49 -2.91 -0.02 3.10 15 9 C 0.09 4.83 2.84 -11.64 -0.03 4.79 15 10 H 0.02 1.27 8.13 -2.39 -0.02 1.25 15 11 C -0.14 -6.94 5.32 -19.46 -0.10 -7.04 15 12 C -0.08 -3.78 9.09 22.16 0.20 -3.58 15 13 C -0.17 -6.33 10.07 22.31 0.22 -6.11 15 14 C -0.10 -3.48 10.02 22.21 0.22 -3.26 15 15 C -0.16 -6.08 10.06 22.45 0.23 -5.86 15 16 C 0.06 2.64 7.05 22.70 0.16 2.80 15 17 O -0.29 -13.98 11.10 -97.87 -1.09 -15.06 15 18 C 0.00 0.22 2.73 -11.11 -0.03 0.19 15 19 C -0.17 -5.81 10.41 30.34 0.32 -5.49 15 20 C -0.14 -4.94 9.79 30.36 0.30 -4.64 15 21 H 0.26 13.98 8.31 -92.71 -0.77 13.21 15 22 H 0.13 6.52 6.17 -2.91 -0.02 6.50 15 23 H 0.14 4.43 8.06 -2.91 -0.02 4.41 15 24 H 0.16 3.96 8.06 -2.91 -0.02 3.93 15 25 H 0.14 4.46 8.06 -2.91 -0.02 4.44 15 26 H 0.11 3.54 8.14 -2.38 -0.02 3.52 15 27 H 0.11 3.42 8.14 -2.38 -0.02 3.40 15 28 H 0.11 3.55 8.14 -2.39 -0.02 3.53 15 29 H 0.11 3.94 8.14 -2.39 -0.02 3.92 15 Total: -1.00 -62.69 250.12 4.45 -58.24 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.14 Total: 16.52 kcal Atomic # 6 Polarization: -57.59 SS G_CDS: 2.15 Total: -55.44 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.22 Total: -49.77 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -1.09 Total: -15.06 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -62.69 4.45 -58.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259781670.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.823 kcal (2) G-P(sol) polarization free energy of solvation -62.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds