Wall clock time and date at job start Mon Mar 30 2020 02:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48497 * 109.46749 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47108 * 299.99484 * 3 2 1 6 6 H 1.48500 * 109.47322 * 59.99671 * 3 2 1 7 7 C 1.37872 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00208 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.87099 * 62.37286 * 9 7 2 11 11 C 1.51824 * 110.98029 * 298.54199 * 9 7 2 12 12 C 1.37715 * 132.10787 * 76.28897 * 11 9 7 13 13 C 1.38357 * 119.97267 * 179.75696 * 12 11 9 14 14 C 1.38285 * 119.77086 * 359.96899 * 13 12 11 15 15 C 1.37937 * 120.35573 * 0.12265 * 14 13 12 16 16 C 1.38940 * 107.10167 * 256.28271 * 11 9 7 17 17 O 1.36368 * 111.34656 * 0.90829 * 16 11 9 18 18 C 1.42786 * 109.01840 * 342.37682 * 17 16 11 19 19 C 1.52101 * 122.47325 * 169.16785 * 18 17 16 20 20 C 1.52034 * 122.62190 * 242.55868 * 18 17 16 21 21 H 0.96995 * 120.00057 * 0.02562 * 1 2 3 22 22 H 1.07998 * 120.01595 * 359.73502 * 12 11 9 23 23 H 1.08003 * 120.11544 * 179.97438 * 13 12 11 24 24 H 1.08003 * 119.82328 * 180.10929 * 14 13 12 25 25 H 1.08004 * 119.87911 * 180.02562 * 15 14 13 26 26 H 1.09000 * 117.52414 * 219.37677 * 19 18 17 27 27 H 1.08995 * 117.52539 * 4.55814 * 19 18 17 28 28 H 1.08995 * 117.52543 * 355.69562 * 20 18 17 29 29 H 1.09010 * 117.51870 * 140.84991 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6483 -2.5996 -0.9020 11 6 0.3922 -2.6311 1.2455 12 6 -0.8080 -2.0589 1.6043 13 6 -1.3827 -2.3660 2.8248 14 6 -0.7482 -3.2482 3.6799 15 6 0.4550 -3.8211 3.3235 16 6 1.0421 -3.5146 2.0985 17 8 2.2185 -3.9480 1.5619 18 6 2.2122 -3.6903 0.1575 19 6 3.4584 -3.8281 -0.7036 20 6 2.2869 -4.7995 -0.8796 21 1 -0.4850 0.8400 -0.0004 22 1 -1.3002 -1.3705 0.9334 23 1 -2.3237 -1.9182 3.1086 24 1 -1.1969 -3.4899 4.6321 25 1 0.9436 -4.5094 3.9971 26 1 3.6166 -3.0832 -1.4835 27 1 4.3611 -4.2089 -0.2260 28 1 2.4194 -5.8191 -0.5180 29 1 1.6749 -4.6934 -1.7755 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259781676.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:41 Heat of formation + Delta-G solvation = 11.780616 kcal Electronic energy + Delta-G solvation = -14339.648037 eV Core-core repulsion = 12000.572979 eV Total energy + Delta-G solvation = -2339.075057 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.89352 -38.50657 -36.28289 -35.09548 -32.24287 -30.77445 -28.93891 -25.86193 -23.45814 -23.08329 -22.23670 -21.41947 -18.55718 -17.77947 -17.31213 -16.65597 -16.32779 -15.87211 -15.25661 -14.74875 -14.35398 -14.26483 -13.82782 -13.31779 -12.91078 -12.77269 -12.65084 -12.40916 -12.36766 -12.00692 -11.80392 -11.32084 -11.10784 -10.64200 -10.58234 -9.44153 -8.78551 -8.11116 -6.29404 0.68760 0.77754 1.37680 1.40198 1.50707 2.33026 2.37581 2.90781 3.10016 3.18826 3.69348 4.08276 4.12552 4.26579 4.42896 4.50205 4.62059 4.68635 4.79314 4.92051 4.93988 5.11241 5.22703 5.34019 5.54327 5.64779 5.69262 5.89844 6.03647 6.13275 6.17934 6.53797 6.76242 7.36732 8.88001 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.015319 C = 0.010358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.296725 B = 1827.366089 C = 2702.637671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.021 3.979 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.091 3.909 10 H 0.022 0.978 11 C -0.135 4.135 12 C -0.075 4.075 13 C -0.168 4.168 14 C -0.102 4.102 15 C -0.159 4.159 16 C 0.056 3.944 17 O -0.294 6.294 18 C 0.005 3.995 19 C -0.136 4.136 20 C -0.167 4.167 21 H 0.264 0.736 22 H 0.131 0.869 23 H 0.140 0.860 24 H 0.161 0.839 25 H 0.137 0.863 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -5.836 2.460 6.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.179 4.179 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.072 3.928 10 H 0.040 0.960 11 C -0.137 4.137 12 C -0.093 4.093 13 C -0.186 4.186 14 C -0.120 4.120 15 C -0.178 4.178 16 C 0.012 3.988 17 O -0.208 6.208 18 C -0.033 4.033 19 C -0.173 4.173 20 C -0.204 4.204 21 H 0.073 0.927 22 H 0.149 0.851 23 H 0.158 0.842 24 H 0.178 0.822 25 H 0.155 0.845 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.114 -5.818 2.546 6.352 hybrid contribution 0.358 1.163 -0.180 1.230 sum 0.472 -4.655 2.365 5.243 Atomic orbital electron populations 1.69957 1.06828 1.27176 1.49593 1.25679 0.95825 1.02098 0.94306 0.85521 0.79003 0.79557 0.77692 1.19458 1.19900 1.20981 1.21169 0.92820 0.90346 1.51606 0.92476 1.18255 0.90576 0.91967 0.91968 0.96031 1.21400 0.96171 0.96321 0.99762 1.21074 0.94405 0.96572 0.97271 1.21391 1.01649 1.01045 0.94502 1.21047 0.93903 0.96739 1.00277 1.20390 0.97551 1.05177 0.94640 1.20085 0.86669 0.95836 0.96251 1.86359 1.33674 1.79417 1.21381 1.22574 1.03825 0.98254 0.78645 1.23068 0.92318 1.01644 1.00236 1.23464 1.01566 0.95770 0.99622 0.92676 0.85096 0.84197 0.82179 0.84469 0.87314 0.87158 0.86865 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.75 9.82 21.45 0.21 -49.54 15 2 C 0.02 1.17 5.33 84.65 0.45 1.62 15 3 Si 0.96 43.50 29.54 68.60 2.03 45.52 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 5 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 6 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 7 C -0.52 -29.02 8.43 25.60 0.22 -28.80 15 8 H 0.06 3.17 7.45 -2.91 -0.02 3.15 15 9 C 0.09 4.76 2.90 -11.64 -0.03 4.72 15 10 H 0.02 1.21 8.13 -2.39 -0.02 1.19 15 11 C -0.14 -6.93 5.28 -19.46 -0.10 -7.04 15 12 C -0.07 -3.60 8.93 22.17 0.20 -3.40 15 13 C -0.17 -6.49 10.07 22.31 0.22 -6.27 15 14 C -0.10 -3.52 10.02 22.21 0.22 -3.30 15 15 C -0.16 -6.20 10.06 22.44 0.23 -5.97 15 16 C 0.06 2.65 7.05 22.68 0.16 2.81 15 17 O -0.29 -14.03 11.10 -97.77 -1.09 -15.11 15 18 C 0.01 0.24 2.73 -11.12 -0.03 0.21 15 19 C -0.14 -4.95 9.77 30.36 0.30 -4.65 15 20 C -0.17 -5.80 10.41 30.34 0.32 -5.49 15 21 H 0.26 13.83 8.31 -92.71 -0.77 13.06 15 22 H 0.13 6.74 6.03 -2.91 -0.02 6.73 15 23 H 0.14 4.46 8.06 -2.91 -0.02 4.44 15 24 H 0.16 4.00 8.06 -2.91 -0.02 3.97 15 25 H 0.14 4.48 8.06 -2.91 -0.02 4.46 15 26 H 0.11 3.93 8.14 -2.39 -0.02 3.91 15 27 H 0.11 3.55 8.14 -2.39 -0.02 3.53 15 28 H 0.11 3.41 8.14 -2.39 -0.02 3.39 15 29 H 0.11 3.54 8.14 -2.38 -0.02 3.52 15 Total: -1.00 -62.56 249.42 4.44 -58.12 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.14 Total: 16.57 kcal Atomic # 6 Polarization: -57.70 SS G_CDS: 2.14 Total: -55.56 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.21 Total: -49.54 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -1.09 Total: -15.11 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -62.56 4.44 -58.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259781676.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.905 kcal (2) G-P(sol) polarization free energy of solvation -62.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds