Wall clock time and date at job start Mon Mar 30 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42891 * 109.47356 * 2 1 4 4 C 1.42897 * 114.00334 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.18390 * 329.37526 * 4 3 2 6 6 C 1.52580 * 109.22914 * 88.76009 * 4 3 2 7 7 C 1.53100 * 109.95463 * 49.64581 * 6 4 3 8 8 S 1.81745 * 108.83793 * 63.02861 * 7 6 4 9 9 C 1.81748 * 102.22350 * 306.73079 * 8 7 6 10 10 C 1.52586 * 109.22709 * 209.99985 * 4 3 2 11 11 H 1.09005 * 109.30511 * 190.25163 * 10 4 3 12 12 C 1.50701 * 109.39132 * 70.50321 * 10 4 3 13 13 H 1.08002 * 119.99761 * 359.49843 * 12 10 4 14 14 C 1.37871 * 119.99694 * 179.78406 * 12 10 4 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48504 * 109.47209 * 89.99886 * 16 14 12 18 18 H 1.48501 * 109.47358 * 209.99377 * 16 14 12 19 19 H 1.48496 * 109.47341 * 329.99989 * 16 14 12 20 20 H 1.08998 * 109.47441 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47227 * 300.00512 * 1 2 3 22 22 H 1.09005 * 109.46923 * 59.99987 * 1 2 3 23 23 H 1.08995 * 109.47409 * 239.99421 * 2 1 3 24 24 H 1.09005 * 109.46422 * 119.99430 * 2 1 3 25 25 H 1.09001 * 109.38758 * 289.50257 * 6 4 3 26 26 H 1.08994 * 109.39417 * 169.79824 * 6 4 3 27 27 H 1.08997 * 109.57668 * 303.22360 * 7 6 4 28 28 H 1.08994 * 109.67717 * 182.89495 * 7 6 4 29 29 H 1.08996 * 109.57859 * 293.46179 * 9 8 7 30 30 H 1.08996 * 109.57839 * 173.07369 * 9 8 7 31 31 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8577 0.6052 0.5253 6 6 3.9349 1.4684 -1.4395 7 6 3.1445 2.4881 -2.2638 8 16 3.4415 4.1478 -1.5854 9 6 3.0297 3.9252 0.1707 10 6 3.8329 2.7437 0.7209 11 1 4.8965 2.9257 0.5662 12 6 3.5599 2.5964 2.1957 13 1 3.1336 1.6802 2.5770 14 6 3.8489 3.6333 3.0571 15 7 4.3680 4.7489 2.5927 16 14 3.5032 3.4536 4.8840 17 1 4.6979 2.8877 5.5606 18 1 3.1916 4.7855 5.4622 19 1 2.3455 2.5449 5.0818 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8901 25 1 3.8081 0.4764 -1.8731 26 1 4.9918 1.7346 -1.4516 27 1 2.0809 2.2562 -2.2091 28 1 3.4728 2.4540 -3.3026 29 1 1.9638 3.7213 0.2729 30 1 3.2850 4.8293 0.7233 31 1 4.5709 5.4785 3.1988 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787410.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:09 Heat of formation + Delta-G solvation = -80.213270 kcal Electronic energy + Delta-G solvation = -13428.053059 eV Core-core repulsion = 11220.432798 eV Total energy + Delta-G solvation = -2207.620260 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.81236 -36.26708 -34.47638 -31.98185 -31.42607 -27.69838 -26.87643 -23.84996 -23.10078 -21.10214 -18.60612 -17.60813 -17.01975 -16.70101 -16.42398 -15.58563 -15.08839 -14.52730 -14.42047 -14.12036 -13.79150 -13.38651 -12.97376 -12.90490 -12.68152 -12.63838 -12.34978 -12.10060 -12.00712 -11.76112 -11.66455 -11.07015 -10.54133 -10.28533 -10.14716 -8.49738 -8.11495 -6.26807 1.17984 1.40579 1.42091 1.51824 1.92529 2.42016 2.96454 3.18130 3.98254 4.00613 4.19403 4.24677 4.45159 4.53561 4.55867 4.67552 4.74213 4.75630 4.85400 5.00272 5.05287 5.11217 5.21942 5.32386 5.46984 5.74853 5.86074 6.23820 6.58243 6.79654 7.40601 8.91432 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.025596 B = 0.012899 C = 0.009535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.671272 B = 2170.147594 C = 2935.721856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 O -0.388 6.388 4 C 0.096 3.904 5 H 0.053 0.947 6 C -0.137 4.137 7 C -0.050 4.050 8 S -0.355 6.355 9 C -0.026 4.026 10 C 0.052 3.948 11 H 0.018 0.982 12 C -0.518 4.518 13 H 0.053 0.947 14 C 0.014 3.986 15 N -0.916 5.916 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.270 1.270 20 H 0.093 0.907 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.038 0.962 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -8.922 -6.508 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 O -0.308 6.308 4 C 0.038 3.962 5 H 0.072 0.928 6 C -0.175 4.175 7 C -0.198 4.198 8 S -0.128 6.128 9 C -0.174 4.174 10 C 0.032 3.968 11 H 0.036 0.964 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.195 1.195 20 H 0.111 0.889 21 H 0.065 0.935 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.135 0.865 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.912 -7.649 -7.019 11.094 hybrid contribution -0.255 -0.857 1.792 2.003 sum -4.167 -8.506 -5.227 10.818 Atomic orbital electron populations 1.21713 0.93005 1.03099 1.02223 1.22638 0.96317 0.83993 0.99966 1.87955 1.21106 1.26807 1.94957 1.22062 0.81065 0.98636 0.94448 0.92849 1.22182 1.00176 0.99858 0.95326 1.23170 1.03542 0.91513 1.01526 1.86382 1.90950 1.21408 1.14074 1.23353 1.00742 1.05084 0.88266 1.18846 0.94208 0.89708 0.94001 0.96359 1.21364 1.41500 1.00618 0.92276 0.92841 1.25733 0.94746 0.94997 1.03017 1.69960 1.43998 1.05384 1.36207 0.85590 0.78629 0.77376 0.80291 1.19922 1.21012 1.19453 0.88873 0.93480 0.92082 0.92225 0.94359 0.88774 0.90783 0.89835 0.86539 0.93044 0.88807 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 10.28 71.98 0.74 -2.81 16 2 C 0.05 1.40 6.44 71.98 0.46 1.86 16 3 O -0.39 -15.12 7.57 -148.98 -1.13 -16.25 16 4 C 0.10 3.84 2.14 30.32 0.07 3.90 16 5 H 0.05 2.11 7.72 -2.38 -0.02 2.09 16 6 C -0.14 -4.45 5.50 30.49 0.17 -4.28 16 7 C -0.05 -1.64 6.26 72.02 0.45 -1.19 16 8 S -0.35 -15.16 22.33 -56.49 -1.26 -16.42 16 9 C -0.03 -1.33 5.35 72.02 0.38 -0.94 16 10 C 0.05 2.62 1.79 -11.64 -0.02 2.60 16 11 H 0.02 1.02 8.05 -2.38 -0.02 1.00 16 12 C -0.52 -28.20 8.39 25.60 0.21 -27.99 16 13 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 14 C 0.01 0.78 5.29 84.65 0.45 1.23 16 15 N -0.92 -52.87 11.29 21.45 0.24 -52.63 16 16 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 22 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.06 1.47 8.03 -2.39 -0.02 1.45 16 24 H 0.04 1.15 8.08 -2.38 -0.02 1.13 16 25 H 0.09 2.40 8.03 -2.39 -0.02 2.38 16 26 H 0.07 2.49 8.05 -2.39 -0.02 2.47 16 27 H 0.08 2.76 7.36 -2.39 -0.02 2.74 16 28 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.05 2.65 7.36 -2.39 -0.02 2.63 16 30 H 0.09 5.35 5.99 -2.39 -0.01 5.34 16 31 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -60.68 260.77 3.88 -56.80 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.09 Total: 10.60 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: 2.91 Total: -27.62 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.24 Total: -52.63 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.13 Total: -16.25 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -15.16 SS G_CDS: -1.26 Total: -16.42 kcal Total: -60.68 3.88 -56.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787410.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.414 kcal (2) G-P(sol) polarization free energy of solvation -60.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds