Wall clock time and date at job start Mon Mar 30 2020 02:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 109.47411 * 2 1 4 4 C 1.42902 * 114.00459 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.22140 * 30.00090 * 4 3 2 6 6 C 1.52581 * 109.19007 * 270.61997 * 4 3 2 7 7 C 1.53098 * 109.95806 * 310.37025 * 6 4 3 8 8 S 1.81751 * 108.84327 * 296.97913 * 7 6 4 9 9 C 1.81750 * 102.21998 * 53.26109 * 8 7 6 10 10 C 1.52581 * 109.22769 * 149.40226 * 4 3 2 11 11 H 1.08998 * 109.38906 * 169.65347 * 10 4 3 12 12 C 1.50693 * 109.39115 * 289.45551 * 10 4 3 13 13 H 1.08004 * 120.00128 * 0.02562 * 12 10 4 14 14 C 1.37877 * 120.00041 * 180.02562 * 12 10 4 15 15 N 1.31515 * 120.00378 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 120.00132 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47217 * 89.99692 * 16 14 12 18 18 H 1.48496 * 109.47433 * 210.00111 * 16 14 12 19 19 H 1.48498 * 109.47059 * 329.99990 * 16 14 12 20 20 H 1.09001 * 109.47274 * 59.99992 * 1 2 3 21 21 H 1.09002 * 109.47037 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46956 * 299.99496 * 1 2 3 23 23 H 1.09005 * 109.47507 * 240.00119 * 2 1 3 24 24 H 1.09002 * 109.47468 * 120.00520 * 2 1 3 25 25 H 1.09002 * 109.39088 * 70.52285 * 6 4 3 26 26 H 1.09007 * 109.39091 * 190.22509 * 6 4 3 27 27 H 1.08994 * 109.58002 * 177.16645 * 7 6 4 28 28 H 1.09007 * 109.67794 * 56.84661 * 7 6 4 29 29 H 1.09001 * 109.57818 * 186.92381 * 9 8 7 30 30 H 1.09004 * 109.57436 * 66.54466 * 9 8 7 31 31 H 0.96993 * 120.00727 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8588 0.5999 -0.5155 6 6 3.9327 1.4839 1.4401 7 6 3.1408 2.5121 2.2524 8 16 3.4382 4.1647 1.5568 9 6 3.0291 3.9231 -0.1975 10 6 3.8335 2.7361 -0.7339 11 1 4.8964 2.9220 -0.5797 12 6 3.5627 2.5731 -2.2073 13 1 3.1444 1.6500 -2.5806 14 6 3.8489 3.6024 -3.0788 15 7 4.3578 4.7267 -2.6243 16 14 3.5138 3.4001 -4.9054 17 1 2.1342 3.8578 -5.2093 18 1 4.4866 4.2118 -5.6801 19 1 3.6543 1.9698 -5.2790 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.8057 0.4965 1.8840 26 1 4.9896 1.7507 1.4509 27 1 3.4696 2.4885 3.2913 28 1 2.0770 2.2801 2.2007 29 1 3.2848 4.8215 -0.7593 30 1 1.9634 3.7177 -0.2990 31 1 4.5587 5.4510 -3.2373 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787412.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:11 Heat of formation + Delta-G solvation = -64.665303 kcal Electronic energy + Delta-G solvation = -13427.621053 eV Core-core repulsion = 11220.675003 eV Total energy + Delta-G solvation = -2206.946050 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.25817 -34.56180 -32.73551 -30.49129 -29.81143 -25.89714 -25.00130 -22.55131 -21.48252 -19.41523 -16.66128 -15.98873 -15.33653 -15.24779 -14.59919 -13.97507 -13.60930 -13.00289 -12.64576 -12.46360 -12.17256 -12.10186 -11.48078 -11.40793 -11.00663 -10.80845 -10.61977 -10.51765 -10.26735 -10.12165 -9.86132 -9.37716 -8.66432 -8.48062 -8.41399 -6.74572 -6.06091 -4.13813 2.82580 3.27496 3.34745 3.36900 3.70736 4.36713 4.39755 5.25139 5.35478 5.44493 5.47944 5.56872 5.70899 5.72687 5.95387 6.12069 6.13937 6.21097 6.26264 6.38744 6.50279 6.64315 6.85606 6.96649 7.50545 7.70845 7.90747 8.05349 8.27645 8.87030 9.50338 10.98546 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.012912 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.708123 B = 2168.036348 C = 2934.424356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.366 6.366 4 C 0.091 3.909 5 H 0.054 0.946 6 C -0.143 4.143 7 C -0.062 4.062 8 S -0.340 6.340 9 C -0.036 4.036 10 C 0.054 3.946 11 H 0.049 0.951 12 C -0.503 4.503 13 H 0.058 0.942 14 C 0.061 3.939 15 N -0.889 5.889 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.275 1.275 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.042 0.958 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.065 0.935 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 -7.075 5.629 9.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.285 6.285 4 C 0.033 3.967 5 H 0.072 0.928 6 C -0.182 4.182 7 C -0.211 4.211 8 S -0.114 6.114 9 C -0.184 4.184 10 C 0.034 3.966 11 H 0.067 0.933 12 C -0.543 4.543 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.527 5.527 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.200 1.200 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.147 0.853 30 H 0.084 0.916 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.280 -5.784 6.122 9.039 hybrid contribution -0.432 -1.384 -1.551 2.123 sum -3.712 -7.169 4.571 9.277 Atomic orbital electron populations 1.21701 0.94670 1.01228 1.02908 1.22355 0.94939 0.85834 0.98981 1.87991 1.21781 1.24002 1.94731 1.22309 0.80278 1.01149 0.92914 0.92788 1.22254 1.00718 0.97847 0.97358 1.23040 1.03081 0.94751 1.00181 1.86437 1.90958 1.17702 1.16262 1.23801 1.01912 1.06549 0.86100 1.18960 0.96004 0.87408 0.94215 0.93305 1.21065 1.42007 1.00652 0.90576 0.92387 1.24985 0.94808 0.95264 0.98984 1.69808 1.43348 1.04664 1.34902 0.86536 0.78084 0.78094 0.84972 1.20612 1.21177 1.19955 0.91822 0.92035 0.92369 0.93940 0.94729 0.92689 0.90416 0.89937 0.90173 0.85307 0.91648 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 37.16 0.38 -1.63 16 2 C 0.06 0.90 6.45 37.16 0.24 1.14 16 3 O -0.37 -7.36 7.56 -35.23 -0.27 -7.63 16 4 C 0.09 1.87 2.15 -27.16 -0.06 1.82 16 5 H 0.05 1.09 7.71 -51.93 -0.40 0.69 16 6 C -0.14 -2.53 5.51 -26.90 -0.15 -2.67 16 7 C -0.06 -1.12 6.26 37.21 0.23 -0.89 16 8 S -0.34 -7.35 22.33 -107.50 -2.40 -9.75 16 9 C -0.04 -0.89 5.34 37.21 0.20 -0.69 16 10 C 0.05 1.33 1.80 -91.94 -0.17 1.16 16 11 H 0.05 1.31 8.06 -51.93 -0.42 0.89 16 12 C -0.50 -13.43 8.40 -34.44 -0.29 -13.72 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.88 11.26 55.43 0.62 -24.26 16 16 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 24 H 0.03 0.50 8.07 -51.93 -0.42 0.08 16 25 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 26 H 0.08 1.39 8.06 -51.92 -0.42 0.98 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.45 7.36 -51.92 -0.38 1.07 16 29 H 0.13 3.52 5.96 -51.93 -0.31 3.21 16 30 H 0.06 1.64 7.36 -51.93 -0.38 1.26 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 260.82 15.07 3.93 3.93 Total: -1.00 -27.73 260.82 -7.64 -35.36 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.80 Total: 0.32 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 0.30 Total: -13.92 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.62 Total: -24.26 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.27 Total: -7.63 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -2.40 Total: -9.75 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.73 -7.64 -35.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787412.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.303 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds