Wall clock time and date at job start Mon Mar 30 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86802 * 119.99930 * 2 1 4 4 H 1.48504 * 109.47109 * 275.41050 * 3 2 1 5 5 H 1.48497 * 109.47223 * 35.40701 * 3 2 1 6 6 H 1.48496 * 109.47085 * 155.41089 * 3 2 1 7 7 C 1.39970 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99939 * 341.80860 * 7 2 1 9 9 C 1.40892 * 119.99968 * 161.81668 * 7 2 1 10 10 C 1.41417 * 120.94063 * 150.57711 * 9 7 2 11 11 N 1.31521 * 118.90564 * 179.97438 * 10 9 7 12 12 C 1.33283 * 120.98760 * 359.97438 * 11 10 9 13 13 C 1.46910 * 118.95230 * 179.97438 * 12 11 10 14 14 C 1.36680 * 125.98077 * 179.97438 * 13 12 11 15 15 C 1.40422 * 106.71329 * 180.02562 * 14 13 12 16 16 C 1.35149 * 107.10826 * 0.02562 * 15 14 13 17 17 O 1.34131 * 108.75879 * 0.26281 * 16 15 14 18 18 N 1.33283 * 122.09507 * 0.25630 * 12 11 10 19 19 C 1.31530 * 120.98502 * 359.47750 * 18 12 11 20 20 H 0.97003 * 120.00201 * 359.97438 * 1 2 3 21 21 H 1.08004 * 120.55039 * 359.97438 * 10 9 7 22 22 H 1.07996 * 126.64694 * 0.02562 * 14 13 12 23 23 H 1.08004 * 126.44691 * 180.02562 * 15 14 13 24 24 H 1.08002 * 125.61941 * 180.02562 * 16 15 14 25 25 H 1.08000 * 120.54292 * 180.25882 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3755 2.1125 -1.3939 5 1 1.5016 2.6170 0.8112 6 1 3.5923 1.4099 0.5826 7 6 2.0082 -1.2122 -0.0005 8 1 1.5087 -2.1243 0.2911 9 6 3.3644 -1.2424 -0.3813 10 6 4.2481 -2.2087 0.1527 11 7 5.5061 -2.2006 -0.2310 12 6 5.9501 -1.3011 -1.1086 13 6 7.3642 -1.3326 -1.5056 14 6 7.9691 -0.4839 -2.3899 15 6 9.3153 -0.8755 -2.4690 16 6 9.4712 -1.9323 -1.6412 17 8 8.2909 -2.2084 -1.0670 18 7 5.1532 -0.3704 -1.6333 19 6 3.8799 -0.3084 -1.3096 20 1 -0.4850 0.8401 0.0004 21 1 3.8959 -2.9412 0.8639 22 1 7.5022 0.3302 -2.9242 23 1 10.0819 -0.4182 -3.0770 24 1 10.3933 -2.4688 -1.4729 25 1 3.2397 0.4462 -1.7422 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259807518.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:38 Heat of formation + Delta-G solvation = 47.117388 kcal Electronic energy + Delta-G solvation = -13346.243862 eV Core-core repulsion = 10905.160779 eV Total energy + Delta-G solvation = -2441.083083 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.86982 -39.27926 -34.51502 -32.77159 -32.20931 -31.75810 -29.06541 -25.66784 -23.45521 -22.40903 -20.89271 -20.25690 -18.11985 -17.56980 -16.21028 -15.65942 -15.48337 -15.16006 -13.60622 -13.44488 -13.33141 -12.88310 -12.45076 -12.31474 -12.19340 -11.83043 -11.48606 -11.28458 -10.46069 -9.94540 -9.72099 -9.59072 -9.44547 -8.82732 -8.06102 -7.57515 -7.45939 -4.92307 1.55449 2.38936 2.53516 2.85434 2.95217 3.02670 3.25047 3.41700 3.61788 4.26077 4.97869 5.20184 5.37554 5.49235 5.61255 5.83464 6.06425 6.28755 6.35792 6.42629 6.55538 6.71457 6.97995 7.08222 7.37338 7.69923 7.72195 7.82529 8.13229 8.42369 9.34600 9.49818 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.059145 B = 0.008023 C = 0.007315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.299057 B = 3489.013486 C = 3827.054823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.245 1.245 7 C -0.387 4.387 8 H 0.106 0.894 9 C -0.008 4.008 10 C 0.041 3.959 11 N -0.464 5.464 12 C 0.182 3.818 13 C 0.104 3.896 14 C -0.207 4.207 15 C -0.211 4.211 16 C -0.069 4.069 17 O -0.162 6.162 18 N -0.452 5.452 19 C 0.006 3.994 20 H 0.297 0.703 21 H 0.150 0.850 22 H 0.149 0.851 23 H 0.143 0.857 24 H 0.197 0.803 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.179 1.240 -1.460 7.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.168 1.168 7 C -0.415 4.415 8 H 0.123 0.877 9 C -0.016 4.016 10 C -0.135 4.135 11 N -0.176 5.176 12 C -0.073 4.073 13 C 0.051 3.949 14 C -0.228 4.228 15 C -0.230 4.230 16 C -0.138 4.138 17 O -0.056 6.056 18 N -0.164 5.164 19 C -0.167 4.167 20 H 0.108 0.892 21 H 0.167 0.833 22 H 0.167 0.833 23 H 0.160 0.840 24 H 0.213 0.787 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.881 1.063 -1.525 8.097 hybrid contribution -0.725 0.863 0.107 1.132 sum 7.157 1.925 -1.418 7.546 Atomic orbital electron populations 1.69652 1.08251 1.31698 1.29178 1.26381 0.94967 1.02428 0.90829 0.86290 0.81201 0.78991 0.80018 1.18313 1.20446 1.16813 1.19576 0.92221 0.96642 1.33070 0.87653 1.19411 0.95151 0.94554 0.92495 1.22946 0.87587 1.01628 1.01315 1.67753 1.17467 1.21762 1.10617 1.18393 0.89932 0.96236 1.02697 1.19486 0.87167 0.90931 0.97280 1.21629 0.93676 1.03753 1.03773 1.21636 0.97371 1.00061 1.03963 1.23982 0.88306 1.01343 1.00157 1.84099 1.17222 1.47885 1.56379 1.67347 1.05271 1.20222 1.23605 1.22776 0.90976 1.02924 1.00021 0.89202 0.83252 0.83345 0.83967 0.78668 0.83763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.69 13.93 55.55 0.77 -16.92 15 2 C 0.08 1.81 5.42 -17.33 -0.09 1.71 15 3 Si 0.91 18.66 24.53 -169.99 -4.17 14.49 15 4 H -0.26 -5.11 6.70 56.52 0.38 -4.73 15 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 6 H -0.24 -5.43 6.85 56.52 0.39 -5.05 15 7 C -0.39 -9.22 9.60 -37.93 -0.36 -9.58 15 8 H 0.11 2.54 8.06 -52.48 -0.42 2.11 15 9 C -0.01 -0.20 5.13 -106.47 -0.55 -0.75 15 10 C 0.04 0.96 11.10 -16.48 -0.18 0.78 15 11 N -0.46 -11.47 10.32 -10.71 -0.11 -11.58 15 12 C 0.18 4.50 7.57 -156.38 -1.18 3.32 15 13 C 0.10 2.30 7.14 -36.64 -0.26 2.04 15 14 C -0.21 -4.00 10.55 -39.32 -0.41 -4.41 15 15 C -0.21 -3.34 10.88 -39.86 -0.43 -3.78 15 16 C -0.07 -1.08 12.08 29.63 0.36 -0.72 15 17 O -0.16 -3.30 10.66 4.69 0.05 -3.25 15 18 N -0.45 -11.15 10.03 -10.71 -0.11 -11.25 15 19 C 0.01 0.14 8.47 -16.47 -0.14 0.00 15 20 H 0.30 6.10 8.30 -40.82 -0.34 5.76 15 21 H 0.15 3.06 8.06 -52.48 -0.42 2.64 15 22 H 0.15 2.76 8.06 -52.49 -0.42 2.34 15 23 H 0.14 1.76 8.06 -52.48 -0.42 1.33 15 24 H 0.20 2.09 8.06 -52.49 -0.42 1.67 15 25 H 0.15 3.28 4.78 -52.49 -0.25 3.03 15 LS Contribution 231.43 15.07 3.49 3.49 Total: -1.00 -27.43 231.43 -4.87 -32.30 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -1.54 Total: 4.12 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -3.26 Total: -11.40 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.56 Total: -39.75 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: 0.05 Total: -3.25 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.17 Total: 14.49 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.43 -4.87 -32.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807518.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.418 kcal (2) G-P(sol) polarization free energy of solvation -27.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds