Wall clock time and date at job start Mon Mar 30 2020 02:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48504 * 109.47561 * 274.98653 * 3 2 1 5 5 H 1.48498 * 109.47310 * 34.98896 * 3 2 1 6 6 H 1.48500 * 109.47228 * 154.98691 * 3 2 1 7 7 C 1.40040 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00121 * 173.73965 * 7 2 1 9 9 C 1.41422 * 120.00110 * 354.00786 * 7 2 1 10 10 C 1.40463 * 119.77163 * 185.72775 * 9 7 2 11 11 C 1.39513 * 118.80794 * 179.77490 * 10 9 7 12 12 C 1.47893 * 120.84065 * 180.23755 * 11 10 9 13 13 C 1.36786 * 126.92333 * 179.97438 * 12 11 10 14 14 C 1.41057 * 103.87896 * 179.91300 * 13 12 11 15 15 N 1.30242 * 106.58611 * 0.36375 * 14 13 12 16 16 O 1.20899 * 111.92711 * 359.76352 * 15 14 13 17 17 C 1.40223 * 118.31308 * 0.49738 * 11 10 9 18 18 C 1.38481 * 119.40174 * 359.74019 * 17 11 10 19 19 N 1.31474 * 121.16865 * 0.02562 * 18 17 11 20 20 H 0.97001 * 119.99873 * 359.97438 * 1 2 3 21 21 H 1.08004 * 120.59415 * 0.02562 * 10 9 7 22 22 H 1.08003 * 128.05678 * 0.02562 * 13 12 11 23 23 H 1.08002 * 126.70673 * 180.09514 * 14 13 12 24 24 H 1.08007 * 120.30172 * 179.72516 * 17 11 10 25 25 H 1.08001 * 119.41444 * 179.97438 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3835 2.1074 -1.3948 5 1 1.4955 2.6199 0.8028 6 1 3.5876 1.4121 0.5920 7 6 2.0075 -1.2128 -0.0005 8 1 3.0827 -1.2155 -0.1025 9 6 1.3062 -2.4343 0.1268 10 6 2.0191 -3.6385 0.2470 11 6 1.3071 -4.8313 0.3762 12 6 2.0120 -6.1244 0.5110 13 6 1.4425 -7.3608 0.6449 14 6 2.5466 -8.2344 0.7313 15 7 3.6144 -7.4926 0.6551 16 8 3.3425 -6.3210 0.5328 17 6 -0.0940 -4.7735 0.3695 18 6 -0.7232 -3.5465 0.2416 19 7 -0.0302 -2.4352 0.1259 20 1 -0.4850 0.8401 0.0004 21 1 3.0992 -3.6407 0.2435 22 1 0.3920 -7.6102 0.6752 23 1 2.5130 -9.3080 0.8437 24 1 -0.6771 -5.6778 0.4630 25 1 -1.8022 -3.5019 0.2360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259814585.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:15 Heat of formation + Delta-G solvation = 74.785010 kcal Electronic energy + Delta-G solvation = -13290.630663 eV Core-core repulsion = 10850.747338 eV Total energy + Delta-G solvation = -2439.883325 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.77370 -40.06994 -35.77895 -34.85949 -34.13122 -31.98251 -30.78714 -27.72828 -24.77336 -24.52033 -22.89200 -22.19243 -19.81477 -18.47752 -18.10335 -17.24796 -16.24611 -16.19081 -16.11370 -15.14057 -14.37786 -14.29474 -14.25574 -13.83102 -12.99286 -12.87844 -12.71542 -12.45075 -12.19227 -11.75043 -11.63067 -11.47204 -11.06248 -9.67720 -9.59344 -9.48667 -8.35162 -6.56650 -0.11985 0.83918 1.18329 1.42161 1.49554 1.56828 1.70830 2.03998 2.22933 2.82148 3.46929 3.63788 3.86200 4.11855 4.18896 4.35614 4.62480 4.69691 4.76327 4.91827 5.16315 5.17474 5.34493 5.51827 5.67790 6.00304 6.22510 6.64424 6.88388 7.21013 8.11055 8.40890 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.052678 B = 0.007400 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.402653 B = 3782.781512 C = 4301.791861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.026 3.974 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.465 4.465 8 H 0.088 0.912 9 C 0.225 3.775 10 C -0.266 4.266 11 C 0.022 3.978 12 C 0.015 3.985 13 C -0.217 4.217 14 C 0.008 3.992 15 N -0.400 5.400 16 O 0.065 5.935 17 C -0.275 4.275 18 C 0.113 3.887 19 N -0.514 5.514 20 H 0.282 0.718 21 H 0.106 0.894 22 H 0.203 0.797 23 H 0.235 0.765 24 H 0.143 0.857 25 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 -7.903 1.029 7.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.496 4.496 8 H 0.106 0.894 9 C 0.101 3.899 10 C -0.290 4.290 11 C 0.014 3.986 12 C -0.048 4.048 13 C -0.238 4.238 14 C -0.170 4.170 15 N -0.109 5.109 16 O 0.005 5.995 17 C -0.298 4.298 18 C -0.052 4.052 19 N -0.228 5.228 20 H 0.093 0.907 21 H 0.125 0.875 22 H 0.220 0.780 23 H 0.252 0.748 24 H 0.161 0.839 25 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.470 -7.197 0.967 7.277 hybrid contribution -0.026 -0.157 0.063 0.171 sum 0.444 -7.354 1.030 7.439 Atomic orbital electron populations 1.70190 1.08816 1.29423 1.28798 1.26966 0.95761 1.04457 0.92452 0.85121 0.79070 0.75696 0.79414 1.18624 1.19016 1.18091 1.20022 0.95263 0.90579 1.43755 0.89357 1.18899 0.88835 0.92663 0.89540 1.22025 0.99248 0.93243 1.14479 1.17823 0.93225 0.87665 0.99882 1.22978 0.82967 0.96551 1.02286 1.23149 1.03098 0.89418 1.08158 1.25633 0.86931 1.03835 1.00563 1.73824 1.26603 0.89690 1.20779 1.84883 1.24202 1.22081 1.68361 1.21583 0.91777 0.99703 1.16782 1.23031 1.00394 0.88296 0.93433 1.68656 1.07645 1.28722 1.17736 0.90735 0.87550 0.77972 0.74840 0.83882 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.66 11.48 21.84 0.25 -39.41 15 2 C 0.03 1.31 5.49 85.29 0.47 1.78 15 3 Si 0.99 37.63 29.56 68.60 2.03 39.66 15 4 H -0.26 -9.58 7.11 99.48 0.71 -8.88 15 5 H -0.27 -9.63 7.11 99.48 0.71 -8.93 15 6 H -0.26 -9.57 7.11 99.48 0.71 -8.87 15 7 C -0.47 -25.22 9.13 23.49 0.21 -25.00 15 8 H 0.09 4.52 7.85 -2.91 -0.02 4.49 15 9 C 0.22 12.40 6.55 40.19 0.26 12.67 15 10 C -0.27 -13.31 9.56 23.12 0.22 -13.09 15 11 C 0.02 0.94 5.90 -19.93 -0.12 0.82 15 12 C 0.02 0.56 7.19 24.49 0.18 0.74 15 13 C -0.22 -6.03 10.56 22.62 0.24 -5.79 15 14 C 0.01 0.21 12.15 85.62 1.04 1.25 15 15 N -0.40 -13.55 12.05 -58.57 -0.71 -14.26 15 16 O 0.07 2.53 11.13 67.17 0.75 3.27 15 17 C -0.28 -11.05 9.68 22.81 0.22 -10.83 15 18 C 0.11 5.09 11.16 84.80 0.95 6.03 15 19 N -0.51 -27.88 7.87 -189.40 -1.49 -29.37 15 20 H 0.28 13.35 8.29 -92.71 -0.77 12.58 15 21 H 0.11 5.16 8.04 -2.91 -0.02 5.14 15 22 H 0.20 4.15 7.55 -2.91 -0.02 4.13 15 23 H 0.24 3.48 8.06 -2.91 -0.02 3.46 15 24 H 0.14 4.45 7.29 -2.91 -0.02 4.43 15 25 H 0.15 5.83 8.06 -2.91 -0.02 5.81 15 Total: -1.00 -63.88 235.92 5.72 -58.16 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.22 Total: 13.37 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.67 Total: -31.43 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.95 Total: -83.04 kcal Atomic # 8 Polarization: 2.53 SS G_CDS: 0.75 Total: 3.27 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -63.88 5.72 -58.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259814585.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.949 kcal (2) G-P(sol) polarization free energy of solvation -63.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds