Wall clock time and date at job start Mon Mar 30 2020 02:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99238 * 3 2 1 5 5 H 1.48495 * 109.47068 * 29.99898 * 3 2 1 6 6 H 1.48508 * 109.46958 * 149.99703 * 3 2 1 7 7 C 1.37874 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 180.02562 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.32177 * 124.45666 * 95.02993 * 10 9 7 12 12 C 1.51091 * 108.26968 * 179.97438 * 11 10 9 13 13 C 1.50937 * 105.45770 * 359.97438 * 12 11 10 14 14 C 1.37440 * 133.15106 * 180.02562 * 13 12 11 15 15 C 1.38979 * 119.91106 * 179.97438 * 14 13 12 16 16 O 1.35860 * 120.00655 * 179.97438 * 15 14 13 17 17 C 1.38885 * 119.98702 * 0.02562 * 15 14 13 18 18 C 1.37780 * 120.30879 * 359.97438 * 17 15 14 19 19 C 1.39669 * 106.30649 * 359.72485 * 13 12 11 20 20 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 22 22 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 23 23 H 1.08000 * 125.86368 * 359.97438 * 11 10 9 24 24 H 1.09004 * 110.24510 * 118.99572 * 12 11 10 25 25 H 1.08999 * 110.24253 * 240.99726 * 12 11 10 26 26 H 1.08007 * 120.04782 * 359.97438 * 14 13 12 27 27 H 0.96709 * 113.99822 * 89.99741 * 16 15 14 28 28 H 1.08000 * 119.84200 * 180.02562 * 17 15 14 29 29 H 1.08003 * 120.00915 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0138 -2.6149 0.0010 11 6 4.3536 -3.2879 -1.0847 12 6 4.8028 -4.6681 -0.6652 13 6 4.6720 -4.6941 0.8383 14 6 4.9244 -5.6557 1.7873 15 6 4.7017 -5.3787 3.1308 16 8 4.9499 -6.3280 4.0705 17 6 4.2243 -4.1316 3.5126 18 6 3.9699 -3.1645 2.5649 19 6 4.1985 -3.4346 1.2125 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6800 0.8912 22 1 3.8752 -0.6803 -0.8888 23 1 4.3165 -2.9151 -2.0977 24 1 4.1605 -5.4263 -1.1133 25 1 5.8404 -4.8317 -0.9563 26 1 5.2952 -6.6254 1.4893 27 1 5.8517 -6.3096 4.4196 28 1 4.0525 -3.9187 4.5574 29 1 3.5992 -2.1962 2.8672 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259873845.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:37 Heat of formation + Delta-G solvation = -3.835843 kcal Electronic energy + Delta-G solvation = -13545.399972 eV Core-core repulsion = 11205.647734 eV Total energy + Delta-G solvation = -2339.752238 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.06973 -37.80315 -34.65857 -33.04169 -31.34686 -29.25997 -27.83644 -25.81059 -22.41950 -21.90985 -20.95486 -18.32490 -17.70250 -16.76135 -15.63075 -15.12943 -14.90817 -14.23701 -13.91166 -13.52351 -13.27973 -12.53714 -12.27860 -12.06864 -11.69150 -11.50546 -11.38087 -11.10352 -10.42835 -10.33653 -10.12637 -9.94114 -9.42784 -8.90048 -8.58054 -8.48880 -7.43499 -6.06874 -4.05743 1.24835 1.66785 2.99107 3.27884 3.35865 3.38409 4.12372 4.33699 4.41255 4.90175 5.10321 5.22283 5.28596 5.44864 5.60819 5.80018 5.89798 5.94138 6.09146 6.28761 6.36198 6.62820 6.67149 6.80595 6.98551 7.02599 7.07841 7.37997 7.59288 7.73844 7.78813 8.51252 8.99161 9.53423 11.06253 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.038160 B = 0.007927 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.576064 B = 3531.239771 C = 3906.209188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.023 3.977 10 C -0.041 4.041 11 C -0.194 4.194 12 C -0.055 4.055 13 C -0.095 4.095 14 C -0.131 4.131 15 C 0.090 3.910 16 O -0.499 6.499 17 C -0.149 4.149 18 C -0.073 4.073 19 C -0.054 4.054 20 H 0.264 0.736 21 H 0.026 0.974 22 H 0.025 0.975 23 H 0.140 0.860 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.122 0.878 27 H 0.383 0.617 28 H 0.126 0.874 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.272 -8.186 3.481 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.014 4.014 10 C -0.041 4.041 11 C -0.212 4.212 12 C -0.091 4.091 13 C -0.096 4.096 14 C -0.149 4.149 15 C 0.046 3.954 16 O -0.309 6.309 17 C -0.167 4.167 18 C -0.091 4.091 19 C -0.054 4.054 20 H 0.074 0.926 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.157 0.843 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.140 0.860 27 H 0.238 0.762 28 H 0.144 0.856 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.519 -8.230 3.392 14.558 hybrid contribution 0.653 1.005 0.153 1.208 sum 12.172 -7.225 3.545 14.592 Atomic orbital electron populations 1.69903 1.06257 1.26925 1.50814 1.24996 0.94721 0.98957 0.94578 0.86822 0.80406 0.83752 0.78644 1.20168 1.21256 1.18938 1.20920 0.88336 0.94601 1.51034 0.90895 1.18544 0.97318 0.88350 0.97154 1.20901 0.95192 0.97259 0.90726 1.23304 1.04652 0.94650 0.98565 1.19865 1.01417 0.97482 0.90368 1.20414 0.99215 0.94042 0.95888 1.20371 1.03887 0.99106 0.91576 1.18312 1.01494 0.88120 0.87492 1.84827 1.35317 1.53992 1.56740 1.21191 1.02944 0.92580 0.99985 1.20906 0.97261 0.99541 0.91394 1.19931 0.97855 0.94166 0.93481 0.92624 0.95588 0.95722 0.84251 0.88999 0.89260 0.85991 0.76215 0.85625 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.93 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 15 7 C -0.51 -14.58 9.65 -34.44 -0.33 -14.91 15 8 H 0.07 2.30 7.98 -52.48 -0.42 1.88 15 9 C 0.02 0.56 4.45 -29.03 -0.13 0.43 15 10 C -0.04 -0.87 5.33 -102.80 -0.55 -1.41 15 11 C -0.19 -3.53 10.91 -36.04 -0.39 -3.92 15 12 C -0.06 -0.84 6.76 -28.73 -0.19 -1.04 15 13 C -0.10 -1.63 6.37 -104.26 -0.66 -2.29 15 14 C -0.13 -1.99 9.97 -39.60 -0.39 -2.39 15 15 C 0.09 1.36 6.72 -39.07 -0.26 1.10 15 16 O -0.50 -6.37 13.50 -19.30 -0.26 -6.63 15 17 C -0.15 -2.37 9.96 -39.51 -0.39 -2.76 15 18 C -0.07 -1.35 10.07 -39.17 -0.39 -1.75 15 19 C -0.05 -1.07 6.17 -105.04 -0.65 -1.72 15 20 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 21 H 0.03 0.62 7.20 -51.93 -0.37 0.25 15 22 H 0.02 0.58 7.55 -51.93 -0.39 0.18 15 23 H 0.14 2.32 8.06 -52.49 -0.42 1.90 15 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.12 1.55 8.06 -52.48 -0.42 1.13 15 27 H 0.38 2.83 9.06 45.56 0.41 3.24 15 28 H 0.13 1.72 8.06 -52.49 -0.42 1.29 15 29 H 0.13 2.45 8.06 -52.48 -0.42 2.02 15 LS Contribution 256.12 15.07 3.86 3.86 Total: -1.00 -32.37 256.12 -7.22 -39.60 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -2.48 Total: 2.19 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -4.45 Total: -28.76 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.26 Total: -6.63 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.37 -7.22 -39.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873845.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.762 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds