Wall clock time and date at job start Mon Mar 30 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99238 * 3 2 1 5 5 H 1.48495 * 109.47068 * 29.99898 * 3 2 1 6 6 H 1.48508 * 109.46958 * 149.99703 * 3 2 1 7 7 C 1.37874 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 180.02562 * 7 2 1 10 10 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 11 11 C 1.32177 * 124.45666 * 95.02993 * 10 9 7 12 12 C 1.51091 * 108.26968 * 179.97438 * 11 10 9 13 13 C 1.50937 * 105.45770 * 359.97438 * 12 11 10 14 14 C 1.37440 * 133.15106 * 180.02562 * 13 12 11 15 15 C 1.38979 * 119.91106 * 179.97438 * 14 13 12 16 16 O 1.35860 * 120.00655 * 179.97438 * 15 14 13 17 17 C 1.38885 * 119.98702 * 0.02562 * 15 14 13 18 18 C 1.37780 * 120.30879 * 359.97438 * 17 15 14 19 19 C 1.39669 * 106.30649 * 359.72485 * 13 12 11 20 20 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46670 * 60.00337 * 9 7 2 22 22 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 23 23 H 1.08000 * 125.86368 * 359.97438 * 11 10 9 24 24 H 1.09004 * 110.24510 * 118.99572 * 12 11 10 25 25 H 1.08999 * 110.24253 * 240.99726 * 12 11 10 26 26 H 1.08007 * 120.04782 * 359.97438 * 14 13 12 27 27 H 0.96709 * 113.99822 * 89.99741 * 16 15 14 28 28 H 1.08000 * 119.84200 * 180.02562 * 17 15 14 29 29 H 1.08003 * 120.00915 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0138 -2.6149 0.0010 11 6 4.3536 -3.2879 -1.0847 12 6 4.8028 -4.6681 -0.6652 13 6 4.6720 -4.6941 0.8383 14 6 4.9244 -5.6557 1.7873 15 6 4.7017 -5.3787 3.1308 16 8 4.9499 -6.3280 4.0705 17 6 4.2243 -4.1316 3.5126 18 6 3.9699 -3.1645 2.5649 19 6 4.1985 -3.4346 1.2125 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6800 0.8912 22 1 3.8752 -0.6803 -0.8888 23 1 4.3165 -2.9151 -2.0977 24 1 4.1605 -5.4263 -1.1133 25 1 5.8404 -4.8317 -0.9563 26 1 5.2952 -6.6254 1.4893 27 1 5.8517 -6.3096 4.4196 28 1 4.0525 -3.9187 4.5574 29 1 3.5992 -2.1962 2.8672 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259873845.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:36 Heat of formation + Delta-G solvation = -25.424379 kcal Electronic energy + Delta-G solvation = -13546.336121 eV Core-core repulsion = 11205.647734 eV Total energy + Delta-G solvation = -2340.688387 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.34031 -38.96590 -36.02758 -34.99081 -32.97275 -30.86829 -29.11786 -27.42384 -24.13410 -23.39180 -22.17748 -19.74798 -18.97656 -18.80825 -17.03770 -16.44616 -16.20887 -15.98267 -15.18520 -14.99354 -14.77677 -14.33277 -13.87375 -13.51548 -13.32176 -12.90147 -12.70940 -12.57824 -12.16548 -12.08381 -11.77217 -11.58484 -11.23650 -10.79740 -10.40685 -9.74021 -8.80765 -8.30902 -6.35733 -0.02873 0.40879 1.34397 1.36556 1.48646 1.60171 2.34042 2.85319 3.03123 3.17750 3.68982 3.77527 4.04388 4.17802 4.34024 4.56733 4.65303 4.81674 4.84732 4.90171 5.02769 5.05389 5.13639 5.35802 5.41613 5.54858 5.71897 5.79422 5.91273 6.08183 6.27912 6.70660 6.89977 7.27662 8.86087 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.038160 B = 0.007927 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.576064 B = 3531.239771 C = 3906.209188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.248 1.248 7 C -0.517 4.517 8 H 0.023 0.977 9 C 0.031 3.969 10 C -0.092 4.092 11 C -0.175 4.175 12 C -0.050 4.050 13 C -0.098 4.098 14 C -0.128 4.128 15 C 0.101 3.899 16 O -0.501 6.501 17 C -0.152 4.152 18 C -0.099 4.099 19 C -0.092 4.092 20 H 0.267 0.733 21 H 0.022 0.978 22 H 0.033 0.967 23 H 0.152 0.848 24 H 0.112 0.888 25 H 0.127 0.873 26 H 0.155 0.845 27 H 0.410 0.590 28 H 0.144 0.856 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.692 -9.299 3.376 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.555 4.555 8 H 0.041 0.959 9 C -0.006 4.006 10 C -0.092 4.092 11 C -0.193 4.193 12 C -0.086 4.086 13 C -0.099 4.099 14 C -0.146 4.146 15 C 0.057 3.943 16 O -0.314 6.314 17 C -0.170 4.170 18 C -0.117 4.117 19 C -0.092 4.092 20 H 0.076 0.924 21 H 0.040 0.960 22 H 0.051 0.949 23 H 0.169 0.831 24 H 0.130 0.870 25 H 0.145 0.855 26 H 0.172 0.828 27 H 0.270 0.730 28 H 0.162 0.838 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.975 -9.363 3.296 17.142 hybrid contribution -0.118 1.195 0.228 1.223 sum 13.857 -8.167 3.524 16.467 Atomic orbital electron populations 1.70066 1.08344 1.28251 1.52465 1.25995 0.95598 1.03388 0.93993 0.85640 0.79382 0.78064 0.79492 1.18669 1.20807 1.17174 1.21136 0.90958 0.92780 1.50600 0.95862 1.18350 0.94066 0.91164 0.97060 1.20890 0.98711 0.96601 0.93032 1.23758 1.01360 0.95902 0.98243 1.19953 1.03784 0.95641 0.89173 1.20680 0.98790 0.93174 0.97216 1.20683 1.02907 0.99890 0.91112 1.18352 1.00036 0.87746 0.88179 1.84763 1.37718 1.52820 1.56143 1.21368 1.02648 0.92676 1.00353 1.20924 0.98947 0.99785 0.92077 1.20065 1.00139 0.95616 0.93382 0.92366 0.95957 0.94925 0.83059 0.87031 0.85499 0.82763 0.73047 0.83849 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.72 13.96 21.45 0.30 -60.42 15 2 C 0.01 0.42 5.47 84.65 0.46 0.88 15 3 Si 0.95 44.61 27.47 68.60 1.88 46.49 15 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 15 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 6 H -0.25 -10.87 6.54 99.48 0.65 -10.22 15 7 C -0.52 -30.84 9.65 25.60 0.25 -30.59 15 8 H 0.02 1.56 7.98 -2.91 -0.02 1.54 15 9 C 0.03 1.51 4.45 29.10 0.13 1.64 15 10 C -0.09 -3.97 5.33 -18.45 -0.10 -4.07 15 11 C -0.18 -6.14 10.91 24.80 0.27 -5.87 15 12 C -0.05 -1.37 6.76 29.30 0.20 -1.17 15 13 C -0.10 -3.16 6.37 -19.63 -0.13 -3.29 15 14 C -0.13 -3.48 9.97 22.26 0.22 -3.26 15 15 C 0.10 2.81 6.72 22.60 0.15 2.96 15 16 O -0.50 -10.97 13.50 -91.98 -1.24 -12.21 15 17 C -0.15 -4.74 9.96 22.32 0.22 -4.51 15 18 C -0.10 -3.78 10.07 22.54 0.23 -3.56 15 19 C -0.09 -3.66 6.17 -20.13 -0.12 -3.79 15 20 H 0.27 15.84 8.31 -92.71 -0.77 15.07 15 21 H 0.02 1.09 7.20 -2.39 -0.02 1.07 15 22 H 0.03 1.52 7.55 -2.39 -0.02 1.50 15 23 H 0.15 4.78 8.06 -2.91 -0.02 4.76 15 24 H 0.11 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.13 2.59 8.14 -2.39 -0.02 2.57 15 26 H 0.15 3.17 8.06 -2.91 -0.02 3.15 15 27 H 0.41 4.37 9.06 -74.05 -0.67 3.70 15 28 H 0.14 3.78 8.06 -2.91 -0.02 3.76 15 29 H 0.11 4.51 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -73.05 256.12 3.16 -69.90 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.43 Total: 10.87 kcal Atomic # 6 Polarization: -56.41 SS G_CDS: 1.78 Total: -54.63 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.30 Total: -60.42 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -1.24 Total: -12.21 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -73.05 3.16 -69.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873845.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.473 kcal (2) G-P(sol) polarization free energy of solvation -73.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds