Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36884 * 126.39494 * 2 1 4 4 C 1.50696 * 126.59121 * 0.21941 * 3 2 1 5 5 C 1.50696 * 109.47161 * 265.00265 * 4 3 2 6 6 H 1.08001 * 120.00397 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99925 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00092 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47057 * 60.00482 * 9 7 5 11 11 H 1.48501 * 109.47061 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47365 * 300.00119 * 9 7 5 13 13 C 1.34669 * 106.81372 * 180.26001 * 3 2 1 14 14 N 1.34128 * 108.02336 * 359.97438 * 13 3 2 15 15 C 1.30498 * 109.25660 * 0.02562 * 14 13 3 16 16 C 1.50700 * 125.65089 * 179.97438 * 15 14 13 17 17 F 1.39907 * 109.46848 * 120.04123 * 16 15 14 18 18 F 1.39901 * 109.46994 * 240.03872 * 16 15 14 19 19 H 1.09005 * 109.47361 * 269.71849 * 1 2 3 20 20 H 1.09001 * 109.47065 * 29.71638 * 1 2 3 21 21 H 1.09007 * 109.46974 * 149.71756 * 1 2 3 22 22 H 1.08994 * 109.47330 * 25.00468 * 4 3 2 23 23 H 1.08997 * 109.46714 * 145.00501 * 4 3 2 24 24 H 0.96998 * 119.99746 * 179.97438 * 8 7 5 25 25 H 1.07999 * 125.98967 * 179.97438 * 13 3 2 26 26 H 1.08999 * 109.47499 * 0.04381 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 1.8363 2.5428 0.0046 5 6 1.8033 3.0626 -1.4095 6 1 2.0741 2.4142 -2.2296 7 6 1.4274 4.3660 -1.6563 8 7 1.0981 5.1558 -0.6575 9 14 1.3872 5.0105 -3.4091 10 1 0.4326 4.2039 -4.2113 11 1 0.9525 6.4305 -3.4045 12 1 2.7436 4.9094 -4.0049 13 6 3.5460 0.6505 -0.0058 14 7 3.5095 -0.6903 -0.0088 15 6 2.2663 -1.0870 -0.0055 16 6 1.8018 -2.5206 -0.0077 17 9 1.0339 -2.7637 1.1362 18 9 1.0275 -2.7581 -1.1484 19 1 -0.3634 -0.0050 1.0277 20 1 -0.3633 0.8925 -0.5094 21 1 -0.3633 -0.8875 -0.5182 22 1 0.8408 2.6168 0.4422 23 1 2.5368 3.1352 0.5932 24 1 0.8340 6.0728 -0.8312 25 1 4.4368 1.2611 -0.0079 26 1 2.6674 -3.1831 -0.0117 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889077.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = -53.001624 kcal Electronic energy + Delta-G solvation = -14357.937634 eV Core-core repulsion = 11494.116629 eV Total energy + Delta-G solvation = -2863.821005 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.01052 -47.00721 -41.55371 -33.83155 -33.29371 -31.13034 -28.32560 -26.66189 -25.09904 -22.93658 -20.67405 -19.34254 -17.36856 -17.30667 -16.90021 -16.48860 -15.24388 -15.04702 -14.56354 -13.86709 -13.45358 -13.38400 -12.74684 -12.62527 -12.58980 -12.28110 -12.13691 -11.52485 -11.33078 -10.88197 -10.79189 -10.12279 -9.69803 -9.47887 -9.05556 -8.56225 -7.72804 -6.18405 -4.24150 2.42553 3.12293 3.25010 3.29571 3.32817 3.56790 3.64649 4.17363 4.34115 4.77411 5.06250 5.15050 5.21339 5.52185 5.53595 5.84004 6.13557 6.33276 6.60406 7.21399 7.34631 7.46136 7.59005 7.76367 8.11190 8.43531 8.79978 9.41345 10.90807 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.046318 B = 0.007729 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.367062 B = 3621.729698 C = 3704.853383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.436 5.436 3 C 0.067 3.933 4 C 0.081 3.919 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 C -0.054 4.054 14 N -0.458 5.458 15 C 0.076 3.924 16 C 0.368 3.632 17 F -0.198 7.198 18 F -0.197 7.197 19 H 0.074 0.926 20 H 0.101 0.899 21 H 0.080 0.920 22 H 0.029 0.971 23 H 0.049 0.951 24 H 0.265 0.735 25 H 0.173 0.827 26 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.117 -11.083 1.631 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.120 5.120 3 C -0.050 4.050 4 C 0.043 3.957 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.199 1.199 13 C -0.202 4.202 14 N -0.178 5.178 15 C -0.183 4.183 16 C 0.312 3.688 17 F -0.180 7.180 18 F -0.179 7.179 19 H 0.093 0.907 20 H 0.119 0.881 21 H 0.099 0.901 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.190 0.810 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.705 -11.470 1.678 11.614 hybrid contribution -0.909 0.995 -0.960 1.655 sum -1.614 -10.475 0.718 10.623 Atomic orbital electron populations 1.22104 0.76670 1.05194 1.03390 1.44975 1.07596 1.06023 1.53360 1.22649 0.90372 0.91468 1.00520 1.17953 0.97583 0.81620 0.98542 1.20963 1.46624 0.96689 0.91539 0.92388 1.24983 0.94852 0.96642 0.97510 1.69932 1.44965 1.07135 1.30963 0.86536 0.78752 0.77781 0.84300 1.20195 1.21105 1.19941 1.21979 0.96740 0.89420 1.12059 1.69885 1.17442 1.13460 1.17011 1.22878 0.87917 0.90054 1.17429 1.19342 0.87686 0.90708 0.71017 1.93013 1.78579 1.95136 1.51235 1.93009 1.78201 1.95191 1.51479 0.90734 0.88051 0.90145 0.95283 0.93295 0.92518 0.80995 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 10.59 59.85 0.63 1.74 15 2 N -0.44 -8.55 3.15 -116.67 -0.37 -8.92 15 3 C 0.07 1.48 6.14 -81.60 -0.50 0.98 15 4 C 0.08 1.99 5.15 -29.04 -0.15 1.84 15 5 C -0.52 -13.95 9.09 -34.44 -0.31 -14.27 15 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 8 N -0.89 -25.11 13.29 55.43 0.74 -24.38 15 9 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 15 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 13 C -0.05 -1.14 11.79 -17.81 -0.21 -1.35 15 14 N -0.46 -9.24 11.25 -10.82 -0.12 -9.36 15 15 C 0.08 1.41 7.34 -155.42 -1.14 0.27 15 16 C 0.37 5.25 5.35 36.01 0.19 5.44 15 17 F -0.20 -2.83 17.29 2.25 0.04 -2.79 15 18 F -0.20 -2.91 16.37 2.25 0.04 -2.87 15 19 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 20 H 0.10 1.73 7.68 -51.93 -0.40 1.33 15 21 H 0.08 1.14 6.95 -51.93 -0.36 0.78 15 22 H 0.03 0.73 7.64 -51.93 -0.40 0.33 15 23 H 0.05 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 25 H 0.17 3.33 8.06 -52.49 -0.42 2.90 15 26 H 0.14 1.53 8.14 -51.93 -0.42 1.11 15 LS Contribution 243.93 15.07 3.68 3.68 Total: -1.00 -29.72 243.93 -5.00 -34.71 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -2.39 Total: -2.16 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.59 Total: -3.75 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.25 Total: -42.66 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.08 Total: -5.67 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.72 -5.00 -34.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889077.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.289 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds