Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36884 * 126.39494 * 2 1 4 4 C 1.50696 * 126.59121 * 0.21941 * 3 2 1 5 5 C 1.50696 * 109.47161 * 265.00265 * 4 3 2 6 6 H 1.08001 * 120.00397 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99925 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00092 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99953 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47057 * 60.00482 * 9 7 5 11 11 H 1.48501 * 109.47061 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47365 * 300.00119 * 9 7 5 13 13 C 1.34669 * 106.81372 * 180.26001 * 3 2 1 14 14 N 1.34128 * 108.02336 * 359.97438 * 13 3 2 15 15 C 1.30498 * 109.25660 * 0.02562 * 14 13 3 16 16 C 1.50700 * 125.65089 * 179.97438 * 15 14 13 17 17 F 1.39907 * 109.46848 * 120.04123 * 16 15 14 18 18 F 1.39901 * 109.46994 * 240.03872 * 16 15 14 19 19 H 1.09005 * 109.47361 * 269.71849 * 1 2 3 20 20 H 1.09001 * 109.47065 * 29.71638 * 1 2 3 21 21 H 1.09007 * 109.46974 * 149.71756 * 1 2 3 22 22 H 1.08994 * 109.47330 * 25.00468 * 4 3 2 23 23 H 1.08997 * 109.46714 * 145.00501 * 4 3 2 24 24 H 0.96998 * 119.99746 * 179.97438 * 8 7 5 25 25 H 1.07999 * 125.98967 * 179.97438 * 13 3 2 26 26 H 1.08999 * 109.47499 * 0.04381 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 1.8363 2.5428 0.0046 5 6 1.8033 3.0626 -1.4095 6 1 2.0741 2.4142 -2.2296 7 6 1.4274 4.3660 -1.6563 8 7 1.0981 5.1558 -0.6575 9 14 1.3872 5.0105 -3.4091 10 1 0.4326 4.2039 -4.2113 11 1 0.9525 6.4305 -3.4045 12 1 2.7436 4.9094 -4.0049 13 6 3.5460 0.6505 -0.0058 14 7 3.5095 -0.6903 -0.0088 15 6 2.2663 -1.0870 -0.0055 16 6 1.8018 -2.5206 -0.0077 17 9 1.0339 -2.7637 1.1362 18 9 1.0275 -2.7581 -1.1484 19 1 -0.3634 -0.0050 1.0277 20 1 -0.3633 0.8925 -0.5094 21 1 -0.3633 -0.8875 -0.5182 22 1 0.8408 2.6168 0.4422 23 1 2.5368 3.1352 0.5932 24 1 0.8340 6.0728 -0.8312 25 1 4.4368 1.2611 -0.0079 26 1 2.6674 -3.1831 -0.0117 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889077.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = -70.399003 kcal Electronic energy + Delta-G solvation = -14358.692041 eV Core-core repulsion = 11494.116629 eV Total energy + Delta-G solvation = -2864.575412 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.15666 -48.14868 -43.10851 -35.66488 -34.95953 -32.88902 -29.94542 -28.11200 -26.71113 -24.77924 -22.15853 -20.89824 -18.70743 -18.60266 -18.40529 -18.10568 -16.84695 -16.55281 -16.34972 -15.03414 -14.96517 -14.52189 -14.49427 -14.27277 -13.91377 -13.79542 -13.68126 -13.38756 -12.86722 -12.64881 -12.46928 -11.97862 -11.69351 -11.15231 -10.63464 -10.58426 -9.39657 -8.25077 -6.38878 0.87958 1.40775 1.42054 1.50520 1.69364 1.94419 2.36574 2.39678 3.04046 3.06912 3.61896 3.88513 3.90614 4.03759 4.26978 4.44574 4.53307 4.67123 4.98113 5.21773 5.57998 5.65796 5.67529 6.01804 6.14534 6.70169 6.85197 7.30645 8.83409 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.046318 B = 0.007729 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.367062 B = 3621.729698 C = 3704.853383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.442 5.442 3 C 0.036 3.964 4 C 0.095 3.905 5 C -0.533 4.533 6 H 0.049 0.951 7 C 0.016 3.984 8 N -0.923 5.923 9 Si 0.962 3.038 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.270 1.270 13 C -0.059 4.059 14 N -0.472 5.472 15 C 0.087 3.913 16 C 0.375 3.625 17 F -0.195 7.195 18 F -0.198 7.198 19 H 0.093 0.907 20 H 0.086 0.914 21 H 0.102 0.898 22 H 0.015 0.985 23 H 0.029 0.971 24 H 0.268 0.732 25 H 0.180 0.820 26 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 -12.447 0.923 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.125 5.125 3 C -0.082 4.082 4 C 0.057 3.943 5 C -0.572 4.572 6 H 0.068 0.932 7 C -0.183 4.183 8 N -0.562 5.562 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.195 1.195 13 C -0.207 4.207 14 N -0.192 5.192 15 C -0.173 4.173 16 C 0.320 3.680 17 F -0.177 7.177 18 F -0.179 7.179 19 H 0.112 0.888 20 H 0.105 0.895 21 H 0.121 0.879 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.197 0.803 26 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.924 -12.836 0.973 12.906 hybrid contribution -0.866 1.351 -0.696 1.749 sum -1.791 -11.486 0.277 11.628 Atomic orbital electron populations 1.22294 0.74935 1.05535 1.04815 1.45192 1.08800 1.05647 1.52832 1.22229 0.91284 0.91055 1.03605 1.17589 0.96205 0.83430 0.97114 1.21192 1.46616 0.96994 0.92358 0.93227 1.25774 0.94324 0.96801 1.01436 1.70031 1.45660 1.07506 1.32969 0.85538 0.78888 0.77370 0.79506 1.19544 1.20400 1.19504 1.22191 0.96787 0.90237 1.11442 1.69912 1.18389 1.12662 1.18229 1.23865 0.87475 0.91679 1.14317 1.19685 0.88884 0.88580 0.70879 1.93023 1.78654 1.94831 1.51162 1.93013 1.78355 1.94907 1.51610 0.88828 0.89536 0.87908 0.96664 0.95296 0.92274 0.80286 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.03 10.59 127.77 1.35 3.38 15 2 N -0.44 -16.88 3.15 -523.03 -1.65 -18.53 15 3 C 0.04 1.59 6.14 40.95 0.25 1.84 15 4 C 0.09 4.79 5.15 29.10 0.15 4.94 15 5 C -0.53 -29.06 9.09 25.60 0.23 -28.83 15 6 H 0.05 2.73 7.74 -2.91 -0.02 2.71 15 7 C 0.02 0.88 5.46 84.65 0.46 1.34 15 8 N -0.92 -52.55 13.29 21.45 0.28 -52.26 15 9 Si 0.96 42.64 29.54 68.60 2.03 44.67 15 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 15 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 13 C -0.06 -2.48 11.79 83.52 0.98 -1.50 15 14 N -0.47 -18.35 11.25 -188.13 -2.12 -20.47 15 15 C 0.09 3.06 7.34 138.13 1.01 4.07 15 16 C 0.37 9.41 5.35 71.24 0.38 9.79 15 17 F -0.20 -4.93 17.29 44.97 0.78 -4.15 15 18 F -0.20 -5.17 16.37 44.97 0.74 -4.43 15 19 H 0.09 2.52 8.14 -2.38 -0.02 2.50 15 20 H 0.09 2.94 7.68 -2.39 -0.02 2.92 15 21 H 0.10 2.68 6.95 -2.38 -0.02 2.67 15 22 H 0.02 0.79 7.64 -2.39 -0.02 0.77 15 23 H 0.03 1.54 8.14 -2.39 -0.02 1.52 15 24 H 0.27 14.40 8.31 -92.71 -0.77 13.63 15 25 H 0.18 6.99 8.06 -2.91 -0.02 6.97 15 26 H 0.18 3.17 8.14 -2.39 -0.02 3.15 15 Total: -1.00 -62.59 243.93 6.08 -56.51 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.19 Total: 3.63 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 4.83 Total: -4.96 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -3.48 Total: -91.26 kcal Atomic # 9 Polarization: -10.10 SS G_CDS: 1.51 Total: -8.59 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -62.59 6.08 -56.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889077.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.888 kcal (2) G-P(sol) polarization free energy of solvation -62.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds