Wall clock time and date at job start Mon Mar 30 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99664 * 2 1 4 4 C 1.53002 * 109.47059 * 184.89296 * 3 2 1 5 5 C 1.50703 * 109.39243 * 307.21623 * 4 3 2 6 6 H 1.08001 * 119.99510 * 276.19418 * 5 4 3 7 7 C 1.37880 * 120.00195 * 96.19306 * 5 4 3 8 8 N 1.31507 * 120.00109 * 163.58286 * 7 5 4 9 9 Si 1.86804 * 119.99660 * 343.58610 * 7 5 4 10 10 H 1.48494 * 109.47152 * 93.00295 * 9 7 5 11 11 H 1.48508 * 109.46709 * 213.00258 * 9 7 5 12 12 H 1.48494 * 109.47242 * 332.99964 * 9 7 5 13 13 C 1.52585 * 109.39275 * 187.50907 * 4 3 2 14 14 C 1.52585 * 110.72682 * 169.18011 * 13 4 3 15 15 C 1.53100 * 109.95623 * 70.67377 * 14 13 4 16 16 S 1.81748 * 108.84009 * 296.97490 * 15 14 13 17 17 C 1.53099 * 109.38756 * 67.01407 * 4 3 2 18 18 H 1.08998 * 109.47655 * 299.99565 * 1 2 3 19 19 H 1.09002 * 109.47336 * 59.99774 * 1 2 3 20 20 H 1.09004 * 109.47411 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46836 * 64.90153 * 3 2 1 22 22 H 1.08992 * 109.47551 * 304.89683 * 3 2 1 23 23 H 0.97003 * 120.00407 * 180.02562 * 8 7 5 24 24 H 1.09005 * 109.22545 * 289.49836 * 13 4 3 25 25 H 1.08998 * 109.22484 * 48.85450 * 13 4 3 26 26 H 1.08998 * 109.38832 * 190.82336 * 14 13 4 27 27 H 1.08999 * 109.38545 * 310.52466 * 14 13 4 28 28 H 1.08994 * 109.57365 * 177.16890 * 15 14 13 29 29 H 1.08996 * 109.57247 * 56.78314 * 15 14 13 30 30 H 1.09005 * 109.57837 * 63.36765 * 17 4 3 31 31 H 1.08994 * 109.68681 * 303.04735 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5305 1.1868 -0.1230 5 6 4.0472 0.2521 0.9402 6 1 4.2413 0.6218 1.9362 7 6 4.2721 -1.0750 0.6414 8 7 5.0113 -1.8128 1.4405 9 14 3.5269 -1.8249 -0.8987 10 1 4.5007 -1.7314 -2.0158 11 1 3.1989 -3.2510 -0.6459 12 1 2.2886 -1.0884 -1.2585 13 6 4.1629 2.5628 0.0642 14 6 5.6768 2.4456 0.2140 15 6 6.3053 2.0500 -1.1248 16 16 5.6880 0.4082 -1.6007 17 6 3.8869 0.6317 -1.5046 18 1 -0.3634 0.5137 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.7596 1.8146 0.9307 22 1 1.6208 1.8765 -0.8428 23 1 5.1699 -2.7464 1.2302 24 1 3.9350 3.1835 -0.8024 25 1 3.7487 3.0295 0.9579 26 1 6.0839 3.4041 0.5358 27 1 5.9087 1.6864 0.9610 28 1 7.3900 2.0170 -1.0234 29 1 6.0299 2.7789 -1.8870 30 1 3.5643 1.3328 -2.2744 31 1 3.3914 -0.3276 -1.6538 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892148.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:07 Heat of formation + Delta-G solvation = -7.037498 kcal Electronic energy + Delta-G solvation = -13948.942827 eV Core-core repulsion = 11744.495707 eV Total energy + Delta-G solvation = -2204.447121 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.11653 -35.85266 -32.42131 -31.00348 -27.10705 -26.49468 -24.78641 -24.53734 -21.24189 -18.80892 -16.85905 -15.89238 -15.48448 -15.13552 -14.84368 -14.34532 -13.80091 -13.12263 -12.76469 -12.55420 -12.23046 -12.08120 -11.71975 -11.25004 -10.91493 -10.62771 -10.40236 -10.01276 -9.76136 -9.59428 -9.27004 -8.83967 -8.66270 -8.28616 -7.94819 -6.45541 -5.88105 -3.80287 2.75711 3.33603 3.55580 3.66723 3.66792 4.68531 4.75011 5.44280 5.54571 5.64223 5.71855 5.75732 5.82817 5.84942 5.99512 6.07505 6.12409 6.18412 6.19878 6.36357 6.40947 6.51685 6.75290 6.97356 7.02238 7.30020 7.82588 8.10791 8.63165 9.09074 9.81914 11.23851 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.028215 B = 0.018699 C = 0.014881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.129413 B = 1497.008310 C = 1881.118257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.350 6.350 3 C 0.073 3.927 4 C 0.044 3.956 5 C -0.509 4.509 6 H 0.072 0.928 7 C 0.118 3.882 8 N -0.888 5.888 9 Si 0.844 3.156 10 H -0.274 1.274 11 H -0.310 1.310 12 H -0.205 1.205 13 C -0.098 4.098 14 C -0.112 4.112 15 C -0.084 4.084 16 S -0.241 6.241 17 C -0.100 4.100 18 H 0.032 0.968 19 H 0.027 0.973 20 H 0.073 0.927 21 H 0.039 0.961 22 H 0.016 0.984 23 H 0.260 0.740 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 7.145 -5.025 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.269 6.269 3 C -0.006 4.006 4 C 0.042 3.958 5 C -0.545 4.545 6 H 0.090 0.910 7 C -0.086 4.086 8 N -0.525 5.525 9 Si 0.683 3.317 10 H -0.204 1.204 11 H -0.240 1.240 12 H -0.134 1.134 13 C -0.136 4.136 14 C -0.151 4.151 15 C -0.232 4.232 16 S -0.014 6.014 17 C -0.246 4.246 18 H 0.050 0.950 19 H 0.045 0.955 20 H 0.092 0.908 21 H 0.057 0.943 22 H 0.034 0.966 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.183 5.890 -5.267 8.519 hybrid contribution -1.328 0.819 -0.501 1.639 sum -4.512 6.710 -5.768 9.932 Atomic orbital electron populations 1.22634 0.84870 1.01467 0.98634 1.88615 1.16398 1.27310 1.94544 1.22823 0.96462 0.84046 0.97225 1.18662 0.89808 0.94593 0.92732 1.20252 1.45033 0.92808 0.96382 0.91003 1.24652 0.92194 0.96659 0.95134 1.69909 1.35721 1.07863 1.38960 0.87776 0.82204 0.76827 0.84934 1.20361 1.23952 1.13376 1.21341 0.95795 0.96783 0.99669 1.21614 0.94940 1.01264 0.97245 1.23321 1.02500 0.97264 1.00149 1.86706 1.06676 1.19110 1.88883 1.24486 0.93678 1.05297 1.01160 0.94987 0.95471 0.90840 0.94311 0.96607 0.93020 0.94635 0.92446 0.93482 0.87843 0.89361 0.91980 0.92195 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 101.05 1.11 1.46 16 2 O -0.35 -7.67 5.68 -35.23 -0.20 -7.87 16 3 C 0.07 1.50 4.80 37.16 0.18 1.68 16 4 C 0.04 0.99 0.50 -155.82 -0.08 0.92 16 5 C -0.51 -13.72 5.98 -34.44 -0.21 -13.93 16 6 H 0.07 2.13 7.93 -52.49 -0.42 1.71 16 7 C 0.12 3.37 4.54 -17.82 -0.08 3.29 16 8 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 9 Si 0.84 21.84 21.47 -169.99 -3.65 18.19 16 10 H -0.27 -7.08 5.86 56.52 0.33 -6.74 16 11 H -0.31 -8.37 7.11 56.52 0.40 -7.97 16 12 H -0.20 -4.91 3.98 56.52 0.23 -4.69 16 13 C -0.10 -1.90 4.55 -27.16 -0.12 -2.02 16 14 C -0.11 -2.15 5.60 -26.89 -0.15 -2.30 16 15 C -0.08 -1.57 6.46 37.21 0.24 -1.33 16 16 S -0.24 -5.51 18.20 -107.50 -1.96 -7.46 16 17 C -0.10 -2.24 4.32 37.21 0.16 -2.08 16 18 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 19 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 20 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 21 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 22 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 16 23 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 24 H 0.03 0.61 8.08 -51.93 -0.42 0.19 16 25 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 2.37 6.52 -51.93 -0.34 2.03 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.10 2.42 1.32 -51.93 -0.07 2.35 16 LS Contribution 237.34 15.07 3.58 3.58 Total: -1.00 -30.49 237.34 -5.24 -35.73 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -4.84 Total: -1.33 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 1.05 Total: -14.32 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.77 Total: -26.52 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.20 Total: -7.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -3.65 Total: 18.19 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -1.96 Total: -7.46 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.49 -5.24 -35.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892148.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.691 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds