Wall clock time and date at job start Mon Mar 30 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99664 * 2 1 4 4 C 1.53002 * 109.47059 * 184.89296 * 3 2 1 5 5 C 1.50703 * 109.39243 * 307.21623 * 4 3 2 6 6 H 1.08001 * 119.99510 * 276.19418 * 5 4 3 7 7 C 1.37880 * 120.00195 * 96.19306 * 5 4 3 8 8 N 1.31507 * 120.00109 * 163.58286 * 7 5 4 9 9 Si 1.86804 * 119.99660 * 343.58610 * 7 5 4 10 10 H 1.48494 * 109.47152 * 93.00295 * 9 7 5 11 11 H 1.48508 * 109.46709 * 213.00258 * 9 7 5 12 12 H 1.48494 * 109.47242 * 332.99964 * 9 7 5 13 13 C 1.52585 * 109.39275 * 187.50907 * 4 3 2 14 14 C 1.52585 * 110.72682 * 169.18011 * 13 4 3 15 15 C 1.53100 * 109.95623 * 70.67377 * 14 13 4 16 16 S 1.81748 * 108.84009 * 296.97490 * 15 14 13 17 17 C 1.53099 * 109.38756 * 67.01407 * 4 3 2 18 18 H 1.08998 * 109.47655 * 299.99565 * 1 2 3 19 19 H 1.09002 * 109.47336 * 59.99774 * 1 2 3 20 20 H 1.09004 * 109.47411 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46836 * 64.90153 * 3 2 1 22 22 H 1.08992 * 109.47551 * 304.89683 * 3 2 1 23 23 H 0.97003 * 120.00407 * 180.02562 * 8 7 5 24 24 H 1.09005 * 109.22545 * 289.49836 * 13 4 3 25 25 H 1.08998 * 109.22484 * 48.85450 * 13 4 3 26 26 H 1.08998 * 109.38832 * 190.82336 * 14 13 4 27 27 H 1.08999 * 109.38545 * 310.52466 * 14 13 4 28 28 H 1.08994 * 109.57365 * 177.16890 * 15 14 13 29 29 H 1.08996 * 109.57247 * 56.78314 * 15 14 13 30 30 H 1.09005 * 109.57837 * 63.36765 * 17 4 3 31 31 H 1.08994 * 109.68681 * 303.04735 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5305 1.1868 -0.1230 5 6 4.0472 0.2521 0.9402 6 1 4.2413 0.6218 1.9362 7 6 4.2721 -1.0750 0.6414 8 7 5.0113 -1.8128 1.4405 9 14 3.5269 -1.8249 -0.8987 10 1 4.5007 -1.7314 -2.0158 11 1 3.1989 -3.2510 -0.6459 12 1 2.2886 -1.0884 -1.2585 13 6 4.1629 2.5628 0.0642 14 6 5.6768 2.4456 0.2140 15 6 6.3053 2.0500 -1.1248 16 16 5.6880 0.4082 -1.6007 17 6 3.8869 0.6317 -1.5046 18 1 -0.3634 0.5137 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.7596 1.8146 0.9307 22 1 1.6208 1.8765 -0.8428 23 1 5.1699 -2.7464 1.2302 24 1 3.9350 3.1835 -0.8024 25 1 3.7487 3.0295 0.9579 26 1 6.0839 3.4041 0.5358 27 1 5.9087 1.6864 0.9610 28 1 7.3900 2.0170 -1.0234 29 1 6.0299 2.7789 -1.8870 30 1 3.5643 1.3328 -2.2744 31 1 3.3914 -0.3276 -1.6538 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259892148.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:07 Heat of formation + Delta-G solvation = -28.170260 kcal Electronic energy + Delta-G solvation = -13949.859213 eV Core-core repulsion = 11744.495707 eV Total energy + Delta-G solvation = -2205.363506 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.76635 -37.43036 -34.32846 -32.83411 -28.73561 -27.88992 -26.86148 -26.02591 -22.81464 -20.62440 -18.68289 -17.75441 -17.09250 -16.91570 -16.36234 -16.00342 -15.36016 -14.85020 -14.53860 -14.40491 -13.84292 -13.75092 -13.20776 -12.82786 -12.55149 -12.27421 -12.10936 -11.82531 -11.52047 -11.33181 -11.08216 -10.64014 -10.32997 -10.23443 -9.78208 -8.27426 -8.05121 -5.99331 1.06827 1.35570 1.55436 1.65797 1.92182 2.57827 3.27729 3.35745 3.98119 4.03041 4.17705 4.23226 4.42936 4.53084 4.53842 4.62271 4.66032 4.72128 4.86665 4.88470 4.91102 4.93172 5.22198 5.35511 5.43296 5.66056 5.86879 6.43514 6.58160 6.93542 7.64541 9.06540 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.028215 B = 0.018699 C = 0.014881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.129413 B = 1497.008310 C = 1881.118257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.391 6.391 3 C 0.075 3.925 4 C 0.035 3.965 5 C -0.486 4.486 6 H 0.030 0.970 7 C 0.068 3.932 8 N -0.943 5.943 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.338 1.338 12 H -0.167 1.167 13 C -0.097 4.097 14 C -0.111 4.111 15 C -0.065 4.065 16 S -0.317 6.317 17 C -0.092 4.092 18 H 0.044 0.956 19 H 0.053 0.947 20 H 0.080 0.920 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.252 0.748 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 9.916 -6.815 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.311 6.311 3 C -0.003 4.003 4 C 0.033 3.967 5 C -0.523 4.523 6 H 0.048 0.952 7 C -0.130 4.130 8 N -0.583 5.583 9 Si 0.728 3.272 10 H -0.207 1.207 11 H -0.270 1.270 12 H -0.095 1.095 13 C -0.135 4.135 14 C -0.150 4.150 15 C -0.213 4.213 16 S -0.091 6.091 17 C -0.238 4.238 18 H 0.063 0.937 19 H 0.071 0.929 20 H 0.099 0.901 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.680 8.706 -7.076 12.156 hybrid contribution -0.848 0.080 0.144 0.863 sum -5.527 8.786 -6.932 12.482 Atomic orbital electron populations 1.22861 0.82134 1.02690 1.00495 1.88469 1.19442 1.28371 1.94830 1.22731 0.94525 0.84099 0.98944 1.18778 0.91717 0.95130 0.91102 1.20429 1.42793 0.93151 0.95934 0.95182 1.25265 0.92803 0.97405 0.97570 1.70067 1.38845 1.07818 1.41557 0.87185 0.83220 0.74643 0.82160 1.20674 1.26987 1.09457 1.21328 0.95307 0.95218 1.01607 1.21534 0.95578 1.01553 0.96329 1.23390 1.02969 0.94380 1.00518 1.86997 1.08759 1.24065 1.89246 1.24406 0.92346 1.05137 1.01911 0.93719 0.92895 0.90139 0.93978 0.92999 0.93876 0.91051 0.91779 0.89755 0.92692 0.88140 0.88476 0.88694 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.43 11.01 113.37 1.25 1.68 16 2 O -0.39 -15.98 5.68 -148.98 -0.85 -16.83 16 3 C 0.08 2.79 4.80 71.98 0.35 3.14 16 4 C 0.03 1.47 0.50 -53.03 -0.03 1.44 16 5 C -0.49 -26.48 5.98 25.60 0.15 -26.32 16 6 H 0.03 1.85 7.93 -2.91 -0.02 1.82 16 7 C 0.07 3.99 4.54 84.66 0.38 4.38 16 8 N -0.94 -60.80 13.96 21.45 0.30 -60.51 16 9 Si 0.89 45.82 21.47 68.60 1.47 47.29 16 10 H -0.28 -14.25 5.86 99.48 0.58 -13.67 16 11 H -0.34 -18.63 7.11 99.48 0.71 -17.93 16 12 H -0.17 -7.60 3.98 99.48 0.40 -7.20 16 13 C -0.10 -3.36 4.55 30.32 0.14 -3.22 16 14 C -0.11 -3.96 5.60 30.49 0.17 -3.79 16 15 C -0.07 -2.21 6.46 72.02 0.46 -1.74 16 16 S -0.32 -14.08 18.20 -56.49 -1.03 -15.10 16 17 C -0.09 -3.83 4.32 72.02 0.31 -3.52 16 18 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 19 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 20 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 21 H 0.04 1.52 8.04 -2.39 -0.02 1.50 16 22 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 23 H 0.25 15.86 8.31 -92.71 -0.77 15.09 16 24 H 0.07 2.02 8.08 -2.38 -0.02 2.00 16 25 H 0.06 2.13 8.01 -2.39 -0.02 2.11 16 26 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.05 2.51 6.52 -2.39 -0.02 2.49 16 28 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.09 3.84 1.32 -2.39 0.00 3.83 16 Total: -1.00 -69.09 237.34 3.75 -65.35 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.66 Total: 7.76 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 3.19 Total: -27.97 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.30 Total: -60.51 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.85 Total: -16.83 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.47 Total: 47.29 kcal Atomic # 16 Polarization: -14.08 SS G_CDS: -1.03 Total: -15.10 kcal Total: -69.09 3.75 -65.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892148.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.176 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds