Wall clock time and date at job start Mon Mar 30 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 113.99930 * 2 1 4 4 C 1.53003 * 109.47073 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.38910 * 54.50134 * 4 3 2 6 6 H 1.07999 * 119.99985 * 238.21536 * 5 4 3 7 7 C 1.37881 * 120.00287 * 58.21131 * 5 4 3 8 8 N 1.31520 * 119.99635 * 5.33735 * 7 5 4 9 9 Si 1.86794 * 120.00174 * 185.33640 * 7 5 4 10 10 H 1.48506 * 109.47151 * 90.00068 * 9 7 5 11 11 H 1.48502 * 109.47368 * 209.99685 * 9 7 5 12 12 H 1.48497 * 109.47211 * 330.00235 * 9 7 5 13 13 C 1.52585 * 109.30821 * 174.24835 * 4 3 2 14 14 C 1.52589 * 110.72438 * 190.77388 * 13 4 3 15 15 C 1.53093 * 109.95682 * 289.32522 * 14 13 4 16 16 S 1.81751 * 108.83913 * 63.02719 * 15 14 13 17 17 C 1.53092 * 109.39460 * 294.69734 * 4 3 2 18 18 H 1.08995 * 109.46689 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47101 * 299.99814 * 1 2 3 20 20 H 1.08997 * 109.47108 * 60.00045 * 1 2 3 21 21 H 1.08999 * 109.47031 * 60.00588 * 3 2 1 22 22 H 1.08991 * 109.47290 * 299.99774 * 3 2 1 23 23 H 0.96995 * 119.99635 * 180.02562 * 8 7 5 24 24 H 1.08995 * 109.22728 * 311.09950 * 13 4 3 25 25 H 1.09010 * 109.22251 * 70.50190 * 13 4 3 26 26 H 1.08995 * 109.38958 * 49.48284 * 14 13 4 27 27 H 1.08999 * 109.38573 * 169.27794 * 14 13 4 28 28 H 1.09002 * 109.57298 * 182.83061 * 15 14 13 29 29 H 1.08997 * 109.57781 * 303.22074 * 15 14 13 30 30 H 1.09005 * 109.57636 * 296.73007 * 17 4 3 31 31 H 1.09004 * 109.57758 * 57.11409 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9695 0.3221 -1.1563 6 1 4.5444 -0.5742 -0.9758 7 6 3.6325 0.6770 -2.4454 8 7 3.0243 1.8203 -2.6749 9 14 4.0399 -0.4659 -3.8656 10 1 2.9067 -1.3989 -4.0910 11 1 4.2736 0.3349 -5.0941 12 1 5.2632 -1.2426 -3.5407 13 6 4.1516 2.5731 -0.1437 14 6 5.6502 2.4735 -0.4131 15 6 6.3770 1.9956 0.8468 16 16 5.7974 0.3233 1.2600 17 6 3.9941 0.5433 1.3129 18 1 -0.3632 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.6886 1.8463 0.8900 22 1 1.6886 1.8463 -0.8899 23 1 2.7869 2.0697 -3.5817 24 1 3.6718 3.0944 -0.9720 25 1 3.9895 3.1351 0.7762 26 1 5.8260 1.7655 -1.2229 27 1 6.0321 3.4533 -0.6998 28 1 7.4512 1.9748 0.6629 29 1 6.1589 2.6723 1.6730 30 1 3.7296 1.1916 2.1483 31 1 3.5112 -0.4265 1.4338 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892151.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:09 Heat of formation + Delta-G solvation = -54.448250 kcal Electronic energy + Delta-G solvation = -13725.889335 eV Core-core repulsion = 11519.386330 eV Total energy + Delta-G solvation = -2206.503005 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.66940 -35.59932 -32.14385 -30.80809 -26.43399 -26.12679 -25.01729 -24.16219 -20.83477 -18.91614 -16.21788 -15.49246 -15.05472 -14.94088 -14.30334 -14.04528 -13.60796 -13.21551 -12.63614 -12.33252 -11.91280 -11.60019 -11.42376 -11.10867 -10.77331 -10.53472 -10.44769 -10.19824 -9.92610 -9.67312 -9.26365 -9.07168 -8.57844 -8.39719 -8.21768 -6.63362 -5.91688 -3.91129 2.78788 3.38052 3.44258 3.49844 3.52414 4.51972 4.93282 5.37859 5.69685 5.81516 5.91906 6.04093 6.06867 6.13731 6.20374 6.24117 6.40590 6.47657 6.55438 6.64604 6.82069 7.07180 7.31202 7.44411 7.50463 7.74940 8.10009 8.28741 8.52301 9.05584 9.68689 11.12273 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.016773 C = 0.012264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.490252 B = 1668.976007 C = 2282.538763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.372 6.372 3 C 0.080 3.920 4 C 0.070 3.930 5 C -0.467 4.467 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.900 5.900 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.274 1.274 13 C -0.106 4.106 14 C -0.105 4.105 15 C -0.071 4.071 16 S -0.288 6.288 17 C -0.050 4.050 18 H 0.069 0.931 19 H 0.022 0.978 20 H 0.031 0.969 21 H 0.000 1.000 22 H 0.080 0.920 23 H 0.257 0.743 24 H 0.097 0.903 25 H 0.014 0.986 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 1.422 4.764 4.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.290 6.290 3 C 0.002 3.998 4 C 0.069 3.931 5 C -0.505 4.505 6 H 0.086 0.914 7 C -0.136 4.136 8 N -0.541 5.541 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.198 1.198 13 C -0.144 4.144 14 C -0.143 4.143 15 C -0.219 4.219 16 S -0.061 6.061 17 C -0.198 4.198 18 H 0.088 0.912 19 H 0.041 0.959 20 H 0.050 0.950 21 H 0.018 0.982 22 H 0.098 0.902 23 H 0.067 0.933 24 H 0.115 0.885 25 H 0.033 0.967 26 H 0.113 0.887 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.520 0.419 4.811 4.857 hybrid contribution -0.876 0.781 -1.002 1.544 sum -0.356 1.200 3.809 4.009 Atomic orbital electron populations 1.22524 0.84300 1.00850 0.98557 1.87946 1.16488 1.29528 1.95051 1.22675 0.95812 0.83051 0.98307 1.18302 0.89886 0.93397 0.91535 1.20989 1.32031 1.08146 0.89323 0.91352 1.24801 0.95346 0.94926 0.98500 1.69785 1.42850 1.21125 1.20333 0.86626 0.78776 0.81046 0.81803 1.20956 1.21762 1.19846 1.21408 0.94927 0.98123 0.99910 1.21558 0.95759 1.00236 0.96753 1.23321 1.01921 0.95365 1.01333 1.86076 1.09450 1.18375 1.92152 1.23552 0.91259 1.04097 1.00926 0.91221 0.95911 0.95036 0.98158 0.90219 0.93336 0.88496 0.96729 0.88699 0.93873 0.89716 0.91804 0.92996 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 11.01 101.05 1.11 1.75 16 2 O -0.37 -8.55 9.66 -35.23 -0.34 -8.89 16 3 C 0.08 1.84 4.47 37.16 0.17 2.00 16 4 C 0.07 1.64 0.34 -155.83 -0.05 1.59 16 5 C -0.47 -12.08 5.11 -34.44 -0.18 -12.26 16 6 H 0.07 1.87 7.14 -52.49 -0.37 1.50 16 7 C 0.06 1.67 4.95 -17.82 -0.09 1.58 16 8 N -0.90 -23.82 9.55 55.43 0.53 -23.29 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C -0.11 -2.34 4.17 -27.15 -0.11 -2.45 16 14 C -0.10 -2.16 5.60 -26.89 -0.15 -2.31 16 15 C -0.07 -1.31 6.45 37.21 0.24 -1.07 16 16 S -0.29 -5.96 21.05 -107.50 -2.26 -8.22 16 17 C -0.05 -1.08 5.16 37.21 0.19 -0.89 16 18 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 19 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 20 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 22 H 0.08 2.00 6.23 -51.93 -0.32 1.68 16 23 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 24 H 0.10 2.36 6.25 -51.93 -0.32 2.03 16 25 H 0.01 0.29 8.08 -51.92 -0.42 -0.13 16 26 H 0.09 2.23 6.47 -51.93 -0.34 1.89 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 2.10 7.76 -51.93 -0.40 1.69 16 LS Contribution 253.76 15.07 3.82 3.82 Total: -1.00 -26.76 253.76 -6.84 -33.60 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.70 Total: -1.32 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 1.13 Total: -12.06 kcal Atomic # 7 Polarization: -23.82 SS G_CDS: 0.53 Total: -23.29 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.34 Total: -8.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -5.96 SS G_CDS: -2.26 Total: -8.22 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.76 -6.84 -33.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892151.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.850 kcal (2) G-P(sol) polarization free energy of solvation -26.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds