Wall clock time and date at job start Mon Mar 30 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39653 * 120.14949 * 305.82488 * 3 2 1 5 5 C 1.37930 * 119.84358 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.15173 * 359.97438 * 5 4 3 7 7 C 1.38333 * 120.30642 * 0.02562 * 6 5 4 8 8 C 1.37973 * 120.15560 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.08204 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47215 * 220.00304 * 9 8 7 11 11 N 1.46905 * 109.47002 * 340.00201 * 9 8 7 12 12 C 1.52994 * 109.47293 * 99.99978 * 9 8 7 13 13 C 1.50700 * 109.47183 * 174.99944 * 12 9 8 14 14 H 1.08000 * 120.00359 * 0.02562 * 13 12 9 15 15 C 1.37881 * 119.99734 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99535 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00292 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47323 * 89.99972 * 17 15 13 19 19 H 1.48504 * 109.46909 * 210.00165 * 17 15 13 20 20 H 1.48502 * 109.46848 * 329.99848 * 17 15 13 21 21 H 1.07994 * 120.08032 * 0.04640 * 4 3 2 22 22 H 1.07998 * 119.92071 * 180.25376 * 5 4 3 23 23 H 1.07998 * 119.84643 * 179.97438 * 6 5 4 24 24 H 1.08004 * 119.92590 * 180.02562 * 7 6 5 25 25 H 1.00903 * 110.99598 * 296.04405 * 11 9 8 26 26 H 1.00902 * 110.99954 * 59.99798 * 11 9 8 27 27 H 1.08993 * 109.47299 * 295.00444 * 12 9 8 28 28 H 1.09007 * 109.46674 * 55.00134 * 12 9 8 29 29 H 0.97002 * 119.99567 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.7059 0.9791 5 6 4.6490 -0.7005 0.9735 6 6 5.3374 0.0024 0.0003 7 6 4.6486 0.7043 -0.9726 8 6 3.2689 0.7085 -0.9783 9 6 2.5202 1.4742 -2.0385 10 1 1.6565 1.9654 -1.5903 11 7 3.4065 2.4856 -2.6299 12 6 2.0494 0.5089 -3.1281 13 6 1.1972 1.2525 -4.1240 14 1 1.0103 2.3082 -3.9931 15 6 0.6559 0.5852 -5.2023 16 7 -0.0883 1.2341 -6.0711 17 14 0.9784 -1.2408 -5.4284 18 1 -0.0773 -2.0198 -4.7329 19 1 0.9640 -1.5704 -6.8763 20 1 2.3050 -1.5837 -4.8559 21 1 2.7338 -1.2554 1.7388 22 1 5.1929 -1.2498 1.7277 23 1 6.4174 0.0035 0.0007 24 1 5.1921 1.2504 -1.7295 25 1 3.6796 3.1728 -1.9434 26 1 4.2154 2.0550 -3.0522 27 1 2.9152 0.0843 -3.6362 28 1 1.4646 -0.2921 -2.6759 29 1 -0.4688 0.7646 -6.8299 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259960453.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:37 Heat of formation + Delta-G solvation = 52.448581 kcal Electronic energy + Delta-G solvation = -13684.927770 eV Core-core repulsion = 11379.908959 eV Total energy + Delta-G solvation = -2305.018811 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.76780 -36.10877 -35.63946 -32.44507 -31.38041 -30.08044 -28.93706 -24.74991 -23.65548 -21.97583 -19.87251 -18.70078 -16.83151 -15.84231 -15.81197 -15.08946 -14.43401 -14.15416 -13.79219 -13.66587 -13.12873 -12.87558 -12.53872 -12.43934 -12.22536 -11.62596 -11.47535 -11.17043 -11.02018 -10.43758 -10.22334 -9.73612 -9.14954 -8.97354 -8.60139 -8.46344 -8.14297 -5.94342 -3.89827 0.84640 1.31214 2.99855 3.13077 3.34647 3.41695 3.43165 3.97959 4.11986 4.51343 4.79006 4.83313 4.92577 5.07594 5.32997 5.40548 5.46625 5.71720 5.82851 6.02442 6.20856 6.29291 6.34954 6.57409 6.79934 7.00294 7.23971 7.70465 7.79811 7.86605 8.00177 8.65517 9.17440 9.67355 11.19391 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.030420 B = 0.009354 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.236707 B = 2992.611649 C = 3194.824712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.250 3.750 3 C -0.025 4.025 4 C -0.071 4.071 5 C -0.137 4.137 6 C -0.088 4.088 7 C -0.131 4.131 8 C -0.055 4.055 9 C 0.135 3.865 10 H 0.087 0.913 11 N -0.817 5.817 12 C 0.003 3.997 13 C -0.495 4.495 14 H 0.081 0.919 15 C 0.065 3.935 16 N -0.903 5.903 17 Si 0.869 3.131 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.267 1.267 21 H 0.129 0.871 22 H 0.128 0.872 23 H 0.126 0.874 24 H 0.130 0.870 25 H 0.328 0.672 26 H 0.336 0.664 27 H 0.019 0.981 28 H 0.013 0.987 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.096 -3.435 13.739 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.066 4.066 3 C -0.029 4.029 4 C -0.091 4.091 5 C -0.155 4.155 6 C -0.107 4.107 7 C -0.149 4.149 8 C -0.060 4.060 9 C 0.022 3.978 10 H 0.105 0.895 11 N -0.345 5.345 12 C -0.035 4.035 13 C -0.534 4.534 14 H 0.099 0.901 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.697 3.303 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.192 1.192 21 H 0.147 0.853 22 H 0.146 0.854 23 H 0.144 0.856 24 H 0.148 0.852 25 H 0.140 0.860 26 H 0.151 0.849 27 H 0.037 0.963 28 H 0.031 0.969 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.598 -3.267 13.064 17.136 hybrid contribution 1.262 -1.448 0.420 1.967 sum 11.860 -4.716 13.484 18.566 Atomic orbital electron populations 1.81231 1.11948 1.07377 1.07518 1.25562 0.92650 0.94380 0.93978 1.15915 0.84685 1.03423 0.98903 1.21146 0.94422 0.96805 0.96747 1.20989 0.93572 1.01035 0.99881 1.21317 1.00079 0.95380 0.93912 1.20972 0.93165 1.01152 0.99614 1.21627 0.94618 0.94970 0.94792 1.20687 0.93952 0.91746 0.91372 0.89507 1.58678 1.22839 1.16759 1.36178 1.19607 0.96599 0.93883 0.93384 1.20965 1.28279 0.97723 1.06387 0.90083 1.24975 0.95032 0.97531 0.95957 1.69904 1.34413 1.36070 1.13917 0.86943 0.79182 0.86919 0.77240 1.20474 1.21313 1.19202 0.85297 0.85380 0.85594 0.85220 0.85996 0.84916 0.96288 0.96934 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -8.19 18.54 41.84 0.78 -7.41 15 2 C 0.25 4.45 13.22 -22.47 -0.30 4.15 15 3 C -0.03 -0.38 5.73 -106.93 -0.61 -0.99 15 4 C -0.07 -0.80 9.76 -39.17 -0.38 -1.18 15 5 C -0.14 -1.30 10.03 -39.64 -0.40 -1.69 15 6 C -0.09 -0.86 10.04 -39.49 -0.40 -1.26 15 7 C -0.13 -1.59 9.24 -39.64 -0.37 -1.95 15 8 C -0.06 -0.84 5.11 -104.21 -0.53 -1.38 15 9 C 0.13 2.57 2.41 -68.87 -0.17 2.41 15 10 H 0.09 1.82 7.48 -51.93 -0.39 1.43 15 11 N -0.82 -13.93 8.43 -5.66 -0.05 -13.97 15 12 C 0.00 0.07 3.62 -27.89 -0.10 -0.03 15 13 C -0.50 -14.33 9.39 -34.44 -0.32 -14.65 15 14 H 0.08 2.57 7.99 -52.49 -0.42 2.15 15 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 16 N -0.90 -28.65 13.96 55.43 0.77 -27.88 15 17 Si 0.87 22.37 27.47 -169.99 -4.67 17.70 15 18 H -0.28 -7.19 7.11 56.52 0.40 -6.79 15 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 20 H -0.27 -6.53 6.54 56.52 0.37 -6.16 15 21 H 0.13 1.19 8.06 -52.49 -0.42 0.76 15 22 H 0.13 0.84 8.06 -52.49 -0.42 0.42 15 23 H 0.13 0.88 8.06 -52.49 -0.42 0.46 15 24 H 0.13 1.38 6.24 -52.48 -0.33 1.05 15 25 H 0.33 4.55 9.06 -39.29 -0.36 4.20 15 26 H 0.34 5.16 7.29 -39.29 -0.29 4.87 15 27 H 0.02 0.45 7.20 -51.93 -0.37 0.08 15 28 H 0.01 0.31 6.81 -51.93 -0.35 -0.04 15 29 H 0.26 7.78 8.31 -40.82 -0.34 7.44 15 LS Contribution 257.71 15.07 3.88 3.88 Total: -1.00 -33.54 257.71 -5.90 -39.44 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -2.94 Total: 2.97 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -3.67 Total: -14.73 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 1.50 Total: -49.27 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.54 -5.90 -39.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259960453.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.890 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds