Wall clock time and date at job start Mon Mar 30 2020 03:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39653 * 120.14949 * 305.82488 * 3 2 1 5 5 C 1.37930 * 119.84358 * 180.02562 * 4 3 2 6 6 C 1.38385 * 120.15173 * 359.97438 * 5 4 3 7 7 C 1.38333 * 120.30642 * 0.02562 * 6 5 4 8 8 C 1.37973 * 120.15560 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.08204 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47215 * 220.00304 * 9 8 7 11 11 N 1.46905 * 109.47002 * 340.00201 * 9 8 7 12 12 C 1.52994 * 109.47293 * 99.99978 * 9 8 7 13 13 C 1.50700 * 109.47183 * 174.99944 * 12 9 8 14 14 H 1.08000 * 120.00359 * 0.02562 * 13 12 9 15 15 C 1.37881 * 119.99734 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99535 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00292 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47323 * 89.99972 * 17 15 13 19 19 H 1.48504 * 109.46909 * 210.00165 * 17 15 13 20 20 H 1.48502 * 109.46848 * 329.99848 * 17 15 13 21 21 H 1.07994 * 120.08032 * 0.04640 * 4 3 2 22 22 H 1.07998 * 119.92071 * 180.25376 * 5 4 3 23 23 H 1.07998 * 119.84643 * 179.97438 * 6 5 4 24 24 H 1.08004 * 119.92590 * 180.02562 * 7 6 5 25 25 H 1.00903 * 110.99598 * 296.04405 * 11 9 8 26 26 H 1.00902 * 110.99954 * 59.99798 * 11 9 8 27 27 H 1.08993 * 109.47299 * 295.00444 * 12 9 8 28 28 H 1.09007 * 109.46674 * 55.00134 * 12 9 8 29 29 H 0.97002 * 119.99567 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -0.7059 0.9791 5 6 4.6490 -0.7005 0.9735 6 6 5.3374 0.0024 0.0003 7 6 4.6486 0.7043 -0.9726 8 6 3.2689 0.7085 -0.9783 9 6 2.5202 1.4742 -2.0385 10 1 1.6565 1.9654 -1.5903 11 7 3.4065 2.4856 -2.6299 12 6 2.0494 0.5089 -3.1281 13 6 1.1972 1.2525 -4.1240 14 1 1.0103 2.3082 -3.9931 15 6 0.6559 0.5852 -5.2023 16 7 -0.0883 1.2341 -6.0711 17 14 0.9784 -1.2408 -5.4284 18 1 -0.0773 -2.0198 -4.7329 19 1 0.9640 -1.5704 -6.8763 20 1 2.3050 -1.5837 -4.8559 21 1 2.7338 -1.2554 1.7388 22 1 5.1929 -1.2498 1.7277 23 1 6.4174 0.0035 0.0007 24 1 5.1921 1.2504 -1.7295 25 1 3.6796 3.1728 -1.9434 26 1 4.2154 2.0550 -3.0522 27 1 2.9152 0.0843 -3.6362 28 1 1.4646 -0.2921 -2.6759 29 1 -0.4688 0.7646 -6.8299 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259960453.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:37 Heat of formation + Delta-G solvation = 28.212660 kcal Electronic energy + Delta-G solvation = -13685.978718 eV Core-core repulsion = 11379.908959 eV Total energy + Delta-G solvation = -2306.069759 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82209 -37.48014 -37.05328 -34.59681 -32.39367 -31.19763 -30.77302 -26.36709 -24.67590 -23.50107 -21.33193 -19.80922 -18.89120 -17.20688 -16.89343 -16.48762 -16.04903 -15.38133 -15.13377 -14.91179 -14.78414 -14.34861 -14.09678 -13.86263 -13.50069 -13.30316 -13.05248 -12.51397 -12.37590 -12.09524 -11.83809 -11.72353 -11.36568 -10.76967 -9.89933 -9.69157 -9.46252 -8.25655 -6.26016 -0.15321 0.40999 1.29906 1.31234 1.41827 1.64988 1.98754 2.34128 2.90574 2.95858 3.07984 3.72532 3.76594 3.99286 4.18601 4.36380 4.51168 4.53498 4.69450 4.82513 5.03807 5.05822 5.29559 5.39564 5.51017 5.55170 5.64941 5.96091 6.30040 6.45463 6.47461 6.79989 6.83722 7.34846 8.91836 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.030420 B = 0.009354 C = 0.008762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.236707 B = 2992.611649 C = 3194.824712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.268 3.732 3 C -0.054 4.054 4 C -0.064 4.064 5 C -0.120 4.120 6 C -0.072 4.072 7 C -0.131 4.131 8 C -0.075 4.075 9 C 0.146 3.854 10 H 0.052 0.948 11 N -0.831 5.831 12 C 0.009 3.991 13 C -0.498 4.498 14 H 0.036 0.964 15 C 0.000 4.000 16 N -0.954 5.954 17 Si 0.938 3.062 18 H -0.280 1.280 19 H -0.279 1.279 20 H -0.241 1.241 21 H 0.150 0.850 22 H 0.171 0.829 23 H 0.167 0.833 24 H 0.144 0.856 25 H 0.347 0.653 26 H 0.348 0.652 27 H 0.028 0.972 28 H 0.003 0.997 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.875 -5.516 15.551 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.046 4.046 3 C -0.058 4.058 4 C -0.085 4.085 5 C -0.137 4.137 6 C -0.090 4.090 7 C -0.149 4.149 8 C -0.080 4.080 9 C 0.033 3.967 10 H 0.070 0.930 11 N -0.362 5.362 12 C -0.029 4.029 13 C -0.537 4.537 14 H 0.054 0.946 15 C -0.195 4.195 16 N -0.596 5.596 17 Si 0.762 3.238 18 H -0.206 1.206 19 H -0.205 1.205 20 H -0.164 1.164 21 H 0.168 0.832 22 H 0.188 0.812 23 H 0.184 0.816 24 H 0.161 0.839 25 H 0.161 0.839 26 H 0.164 0.836 27 H 0.046 0.954 28 H 0.021 0.979 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.405 -5.339 14.901 21.402 hybrid contribution 0.186 -0.710 -0.060 0.737 sum 14.591 -6.049 14.841 21.674 Atomic orbital electron populations 1.81218 1.13802 1.09819 1.09693 1.26262 0.93469 0.92619 0.92260 1.16155 0.82974 1.05751 1.00948 1.21457 0.95558 0.95664 0.95777 1.21515 0.92592 0.99650 0.99981 1.21801 1.02056 0.93030 0.92118 1.21176 0.91555 1.01439 1.00750 1.21155 0.95840 0.96390 0.94595 1.20131 0.94076 0.91385 0.91097 0.92960 1.58525 1.23318 1.17081 1.37325 1.19460 0.95662 0.94135 0.93632 1.21245 1.28730 0.96167 1.07520 0.94612 1.25932 0.94922 1.02945 0.95729 1.70072 1.36183 1.38375 1.14926 0.85837 0.80112 0.80250 0.77560 1.20647 1.20484 1.16411 0.83240 0.81198 0.81576 0.83872 0.83905 0.83607 0.95373 0.97904 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.83 18.54 19.00 0.35 -19.47 15 2 C 0.27 9.74 13.22 88.33 1.17 10.91 15 3 C -0.05 -1.54 5.73 -21.36 -0.12 -1.66 15 4 C -0.06 -1.21 9.76 22.54 0.22 -0.99 15 5 C -0.12 -1.53 10.03 22.23 0.22 -1.31 15 6 C -0.07 -0.97 10.04 22.33 0.22 -0.74 15 7 C -0.13 -2.67 9.24 22.23 0.21 -2.47 15 8 C -0.07 -2.18 5.11 -19.60 -0.10 -2.28 15 9 C 0.15 5.65 2.41 44.16 0.11 5.75 15 10 H 0.05 2.34 7.48 -2.39 -0.02 2.32 15 11 N -0.83 -28.25 8.43 -171.81 -1.45 -29.69 15 12 C 0.01 0.42 3.62 29.85 0.11 0.53 15 13 C -0.50 -29.98 9.39 25.60 0.24 -29.74 15 14 H 0.04 2.41 7.99 -2.91 -0.02 2.38 15 15 C 0.00 0.02 5.47 84.65 0.46 0.48 15 16 N -0.95 -62.80 13.96 21.45 0.30 -62.50 15 17 Si 0.94 46.58 27.47 68.60 1.88 48.47 15 18 H -0.28 -13.93 7.11 99.48 0.71 -13.22 15 19 H -0.28 -13.41 7.11 99.48 0.71 -12.71 15 20 H -0.24 -10.83 6.54 99.48 0.65 -10.18 15 21 H 0.15 2.16 8.06 -2.91 -0.02 2.14 15 22 H 0.17 0.89 8.06 -2.91 -0.02 0.86 15 23 H 0.17 1.02 8.06 -2.91 -0.02 1.00 15 24 H 0.14 2.48 6.24 -2.91 -0.02 2.46 15 25 H 0.35 9.43 9.06 -89.69 -0.81 8.62 15 26 H 0.35 10.21 7.29 -89.69 -0.65 9.55 15 27 H 0.03 1.30 7.20 -2.39 -0.02 1.28 15 28 H 0.00 0.14 6.81 -2.38 -0.02 0.12 15 29 H 0.26 16.20 8.31 -92.71 -0.77 15.43 15 Total: -1.00 -78.16 257.71 3.49 -74.67 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -0.34 Total: 10.05 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 2.73 Total: -21.52 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -0.80 Total: -111.67 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.88 Total: 48.47 kcal Total: -78.16 3.49 -74.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259960453.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.887 kcal (2) G-P(sol) polarization free energy of solvation -78.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds