Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46851 * 2 1 4 4 C 1.34064 * 124.98105 * 90.00197 * 3 2 1 5 5 C 1.46819 * 106.11746 * 180.02562 * 4 3 2 6 6 C 1.39752 * 134.19917 * 180.02562 * 5 4 3 7 7 C 1.38290 * 120.14057 * 179.97438 * 6 5 4 8 8 C 1.37941 * 120.57777 * 0.02562 * 7 6 5 9 9 C 1.40613 * 120.38443 * 359.97438 * 8 7 6 10 10 C 1.41069 * 120.28076 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00226 * 208.63389 * 10 9 8 12 12 C 1.39955 * 119.99722 * 28.62999 * 10 9 8 13 13 N 1.30845 * 119.99847 * 197.85028 * 12 10 9 14 14 Si 1.86794 * 120.00312 * 17.84817 * 12 10 9 15 15 H 1.48505 * 109.47412 * 270.00202 * 14 12 10 16 16 H 1.48503 * 109.47232 * 29.99941 * 14 12 10 17 17 H 1.48501 * 109.47424 * 149.99975 * 14 12 10 18 18 C 1.40043 * 105.48473 * 0.27501 * 5 4 3 19 19 O 1.34390 * 124.98788 * 270.02454 * 3 2 1 20 20 H 1.09004 * 109.47055 * 299.99594 * 1 2 3 21 21 H 1.08999 * 109.47663 * 59.99655 * 1 2 3 22 22 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.46959 * 240.00808 * 2 1 3 24 24 H 1.08994 * 109.47237 * 120.00146 * 2 1 3 25 25 H 1.08001 * 126.94461 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.92931 * 359.97438 * 6 5 4 27 27 H 1.07998 * 119.70897 * 179.97438 * 7 6 5 28 28 H 1.07999 * 119.80932 * 179.97438 * 8 7 6 29 29 H 0.97003 * 120.00118 * 355.44343 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2885 2.1455 1.0984 5 6 2.7509 3.4556 0.6238 6 6 3.1663 4.6302 1.2569 7 6 3.5530 5.7248 0.5052 8 6 3.5333 5.6719 -0.8730 9 6 3.1195 4.5018 -1.5340 10 6 3.1007 4.4500 -2.9436 11 1 2.3975 3.8061 -3.4510 12 6 3.9932 5.2330 -3.6846 13 7 3.7647 5.4633 -4.9522 14 14 5.5106 5.9494 -2.8640 15 1 5.1871 7.2875 -2.3071 16 1 5.9514 5.0503 -1.7673 17 1 6.5997 6.0800 -3.8650 18 6 2.7170 3.3801 -0.7742 19 8 2.2887 2.1476 -1.1010 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 2.1772 1.8294 2.1252 26 1 3.1855 4.6833 2.3354 27 1 3.8724 6.6291 1.0017 28 1 3.8374 6.5341 -1.4478 29 1 3.0135 5.0380 -5.3947 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259968404.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = 2.317520 kcal Electronic energy + Delta-G solvation = -13872.644498 eV Core-core repulsion = 11533.159090 eV Total energy + Delta-G solvation = -2339.485408 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.34744 -36.76404 -33.90948 -33.73608 -31.27331 -29.67547 -27.73735 -24.85019 -23.60970 -21.44213 -20.56564 -19.72163 -18.12421 -16.35236 -15.66816 -15.15490 -14.75657 -14.04452 -13.87320 -13.49583 -13.03627 -12.54428 -12.38432 -12.08054 -12.01547 -11.33886 -11.13412 -11.10973 -10.69601 -10.66692 -10.25348 -9.76854 -9.53354 -9.26459 -8.75363 -7.61222 -7.36785 -7.12227 -4.55946 2.06521 2.63315 3.11787 3.24501 3.39052 3.56036 3.69597 3.99181 4.51278 5.02047 5.23919 5.28254 5.38658 5.62701 5.76744 5.85874 5.96799 6.06115 6.11940 6.26149 6.36049 6.56308 6.64772 6.91602 7.23999 7.37665 7.44826 7.51852 7.73506 7.86687 7.98812 8.31565 8.47623 8.66909 9.92987 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.010213 C = 0.008408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.704057 B = 2740.882825 C = 3329.417464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C 0.010 3.990 4 C -0.229 4.229 5 C -0.091 4.091 6 C -0.221 4.221 7 C -0.069 4.069 8 C -0.264 4.264 9 C 0.123 3.877 10 C -0.502 4.502 11 H 0.079 0.921 12 C 0.042 3.958 13 N -0.809 5.809 14 Si 1.077 2.923 15 H -0.274 1.274 16 H -0.262 1.262 17 H -0.290 1.290 18 C -0.025 4.025 19 O -0.185 6.185 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.139 0.861 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 -5.743 7.488 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.040 4.040 4 C -0.248 4.248 5 C -0.092 4.092 6 C -0.241 4.241 7 C -0.087 4.087 8 C -0.284 4.284 9 C 0.119 3.881 10 C -0.530 4.530 11 H 0.097 0.903 12 C -0.178 4.178 13 N -0.430 5.430 14 Si 0.903 3.097 15 H -0.201 1.201 16 H -0.186 1.186 17 H -0.217 1.217 18 C -0.072 4.072 19 O -0.086 6.086 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.157 0.843 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.133 0.867 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.569 -4.871 6.800 8.383 hybrid contribution -1.527 -0.950 0.335 1.829 sum -2.096 -5.821 7.135 9.444 Atomic orbital electron populations 1.21776 0.94369 1.01655 1.02755 1.20041 0.96090 0.88398 1.03493 1.22059 1.02463 0.94545 0.84901 1.22044 1.10692 0.94124 0.97987 1.19643 1.02377 0.94258 0.92962 1.19696 1.13871 0.93120 0.97371 1.20465 0.97929 0.96595 0.93759 1.20692 1.16496 0.97276 0.93887 1.16744 0.91165 0.87078 0.93082 1.20628 1.17579 1.23509 0.91313 0.90310 1.27383 1.02276 0.92809 0.95297 1.70546 1.29084 1.31323 1.12085 0.83523 0.73519 0.77560 0.75075 1.20080 1.18621 1.21708 1.19952 1.09428 0.84786 0.93029 1.83716 1.69185 1.22540 1.33161 0.92295 0.92229 0.92094 0.90373 0.89417 0.84314 0.88485 0.88075 0.86701 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.89 37.16 0.37 -1.45 15 2 C -0.04 -0.60 6.44 -27.88 -0.18 -0.78 15 3 C 0.01 0.19 6.49 -35.78 -0.23 -0.04 15 4 C -0.23 -4.59 11.02 -37.58 -0.41 -5.01 15 5 C -0.09 -2.17 6.39 -105.19 -0.67 -2.85 15 6 C -0.22 -4.96 10.10 -39.00 -0.39 -5.35 15 7 C -0.07 -1.55 10.00 -39.67 -0.40 -1.95 15 8 C -0.26 -6.57 7.26 -38.80 -0.28 -6.85 15 9 C 0.12 3.32 5.15 -106.75 -0.55 2.77 15 10 C -0.50 -14.06 9.43 -37.87 -0.36 -14.41 15 11 H 0.08 2.30 8.06 -52.49 -0.42 1.88 15 12 C 0.04 1.13 5.41 -17.33 -0.09 1.03 15 13 N -0.81 -21.88 13.66 55.55 0.76 -21.12 15 14 Si 1.08 24.63 24.90 -169.99 -4.23 20.40 15 15 H -0.27 -5.86 6.43 56.52 0.36 -5.49 15 16 H -0.26 -6.03 7.03 56.52 0.40 -5.63 15 17 H -0.29 -6.37 7.11 56.52 0.40 -5.97 15 18 C -0.03 -0.66 7.15 -37.73 -0.27 -0.93 15 19 O -0.18 -4.51 10.56 4.90 0.05 -4.46 15 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.09 1.00 8.14 -51.93 -0.42 0.57 15 25 H 0.14 2.30 8.06 -52.49 -0.42 1.88 15 26 H 0.10 1.90 8.06 -52.48 -0.42 1.47 15 27 H 0.10 1.91 8.06 -52.49 -0.42 1.49 15 28 H 0.12 2.76 4.36 -52.49 -0.23 2.54 15 29 H 0.29 7.57 8.73 -40.82 -0.36 7.22 15 LS Contribution 250.47 15.07 3.77 3.77 Total: -1.00 -29.47 250.47 -6.35 -35.82 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.23 Total: 1.39 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: -3.47 Total: -35.81 kcal Atomic # 7 Polarization: -21.88 SS G_CDS: 0.76 Total: -21.12 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: 0.05 Total: -4.46 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -4.23 Total: 20.40 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.47 -6.35 -35.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968404.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.140 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds