Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46851 * 2 1 4 4 C 1.34064 * 124.98105 * 90.00197 * 3 2 1 5 5 C 1.46819 * 106.11746 * 180.02562 * 4 3 2 6 6 C 1.39752 * 134.19917 * 180.02562 * 5 4 3 7 7 C 1.38290 * 120.14057 * 179.97438 * 6 5 4 8 8 C 1.37941 * 120.57777 * 0.02562 * 7 6 5 9 9 C 1.40613 * 120.38443 * 359.97438 * 8 7 6 10 10 C 1.41069 * 120.28076 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00226 * 208.63389 * 10 9 8 12 12 C 1.39955 * 119.99722 * 28.62999 * 10 9 8 13 13 N 1.30845 * 119.99847 * 197.85028 * 12 10 9 14 14 Si 1.86794 * 120.00312 * 17.84817 * 12 10 9 15 15 H 1.48505 * 109.47412 * 270.00202 * 14 12 10 16 16 H 1.48503 * 109.47232 * 29.99941 * 14 12 10 17 17 H 1.48501 * 109.47424 * 149.99975 * 14 12 10 18 18 C 1.40043 * 105.48473 * 0.27501 * 5 4 3 19 19 O 1.34390 * 124.98788 * 270.02454 * 3 2 1 20 20 H 1.09004 * 109.47055 * 299.99594 * 1 2 3 21 21 H 1.08999 * 109.47663 * 59.99655 * 1 2 3 22 22 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.46959 * 240.00808 * 2 1 3 24 24 H 1.08994 * 109.47237 * 120.00146 * 2 1 3 25 25 H 1.08001 * 126.94461 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.92931 * 359.97438 * 6 5 4 27 27 H 1.07998 * 119.70897 * 179.97438 * 7 6 5 28 28 H 1.07999 * 119.80932 * 179.97438 * 8 7 6 29 29 H 0.97003 * 120.00118 * 355.44343 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2885 2.1455 1.0984 5 6 2.7509 3.4556 0.6238 6 6 3.1663 4.6302 1.2569 7 6 3.5530 5.7248 0.5052 8 6 3.5333 5.6719 -0.8730 9 6 3.1195 4.5018 -1.5340 10 6 3.1007 4.4500 -2.9436 11 1 2.3975 3.8061 -3.4510 12 6 3.9932 5.2330 -3.6846 13 7 3.7647 5.4633 -4.9522 14 14 5.5106 5.9494 -2.8640 15 1 5.1871 7.2875 -2.3071 16 1 5.9514 5.0503 -1.7673 17 1 6.5997 6.0800 -3.8650 18 6 2.7170 3.3801 -0.7742 19 8 2.2887 2.1476 -1.1010 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 2.1772 1.8294 2.1252 26 1 3.1855 4.6833 2.3354 27 1 3.8724 6.6291 1.0017 28 1 3.8374 6.5341 -1.4478 29 1 3.0135 5.0380 -5.3947 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259968404.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = -15.198145 kcal Electronic energy + Delta-G solvation = -13873.404035 eV Core-core repulsion = 11533.159090 eV Total energy + Delta-G solvation = -2340.244944 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.09144 -38.61611 -35.78364 -35.09049 -33.00138 -31.51601 -29.31845 -26.79301 -24.93537 -23.23374 -22.30585 -21.39982 -20.05554 -18.13437 -17.30290 -16.90224 -16.45896 -15.80072 -15.26697 -15.06817 -14.79224 -14.18643 -13.98486 -13.74590 -13.37767 -12.93848 -12.73364 -12.54741 -12.40731 -12.13801 -11.88309 -11.62929 -11.46569 -11.08492 -10.53778 -9.57498 -9.28501 -8.91804 -6.63083 0.30093 0.75771 1.32088 1.44880 1.62244 1.77273 2.10359 2.14601 2.58637 3.31923 3.62807 4.10241 4.16722 4.31362 4.34794 4.36695 4.60253 4.69651 4.76701 4.83150 4.95410 5.02043 5.16541 5.27561 5.33518 5.53630 5.60583 5.62776 5.87568 5.99469 6.18305 6.28413 6.56823 6.75340 7.88368 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.010213 C = 0.008408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.704057 B = 2740.882825 C = 3329.417464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 C 0.011 3.989 4 C -0.229 4.229 5 C -0.110 4.110 6 C -0.202 4.202 7 C -0.077 4.077 8 C -0.264 4.264 9 C 0.093 3.907 10 C -0.545 4.545 11 H 0.037 0.963 12 C 0.012 3.988 13 N -0.835 5.835 14 Si 1.109 2.891 15 H -0.245 1.245 16 H -0.267 1.267 17 H -0.277 1.277 18 C -0.067 4.067 19 O -0.219 6.219 20 H 0.063 0.937 21 H 0.034 0.966 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.126 0.874 25 H 0.182 0.818 26 H 0.137 0.863 27 H 0.146 0.854 28 H 0.120 0.880 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 -6.119 11.184 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.038 4.038 4 C -0.248 4.248 5 C -0.111 4.111 6 C -0.221 4.221 7 C -0.095 4.095 8 C -0.284 4.284 9 C 0.091 3.909 10 C -0.574 4.574 11 H 0.056 0.944 12 C -0.202 4.202 13 N -0.458 5.458 14 Si 0.929 3.071 15 H -0.170 1.170 16 H -0.192 1.192 17 H -0.203 1.203 18 C -0.113 4.113 19 O -0.122 6.122 20 H 0.082 0.918 21 H 0.053 0.947 22 H 0.114 0.886 23 H 0.099 0.901 24 H 0.144 0.856 25 H 0.199 0.801 26 H 0.155 0.845 27 H 0.164 0.836 28 H 0.138 0.862 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.166 -5.249 10.504 11.744 hybrid contribution -1.776 -0.997 -0.552 2.110 sum -1.942 -6.246 9.952 11.909 Atomic orbital electron populations 1.21771 0.92981 1.03649 1.01783 1.20383 0.97124 0.84962 1.05514 1.23275 1.00429 0.96307 0.83750 1.22480 1.10119 0.92264 0.99955 1.20254 1.02272 0.96446 0.92148 1.20308 1.10267 0.92035 0.99476 1.20960 0.97281 0.98508 0.92712 1.20969 1.15455 0.96533 0.95417 1.17038 0.92422 0.88641 0.92829 1.20486 1.19085 1.25346 0.92463 0.94417 1.28502 1.03761 0.92662 0.95226 1.70614 1.29478 1.33060 1.12656 0.83171 0.71081 0.78219 0.74645 1.16962 1.19185 1.20346 1.20261 1.10990 0.85505 0.94540 1.83713 1.70053 1.22675 1.35775 0.91840 0.94652 0.88629 0.90068 0.85611 0.80060 0.84474 0.83605 0.86208 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.89 71.98 0.71 -2.45 15 2 C -0.04 -1.08 6.44 29.85 0.19 -0.88 15 3 C 0.01 0.40 6.49 24.74 0.16 0.56 15 4 C -0.23 -8.48 11.02 23.56 0.26 -8.22 15 5 C -0.11 -5.02 6.39 -20.23 -0.13 -5.15 15 6 C -0.20 -8.25 10.10 22.65 0.23 -8.02 15 7 C -0.08 -3.18 10.00 22.21 0.22 -2.95 15 8 C -0.26 -12.92 7.26 22.78 0.17 -12.76 15 9 C 0.09 5.22 5.15 -21.24 -0.11 5.11 15 10 C -0.54 -32.67 9.43 23.38 0.22 -32.45 15 11 H 0.04 2.45 8.06 -2.91 -0.02 2.43 15 12 C 0.01 0.67 5.41 85.26 0.46 1.14 15 13 N -0.84 -47.73 13.66 21.83 0.30 -47.43 15 14 Si 1.11 49.90 24.90 68.60 1.71 51.61 15 15 H -0.24 -9.77 6.43 99.48 0.64 -9.13 15 16 H -0.27 -12.09 7.03 99.48 0.70 -11.39 15 17 H -0.28 -11.76 7.11 99.48 0.71 -11.05 15 18 C -0.07 -3.55 7.15 23.47 0.17 -3.38 15 19 O -0.22 -11.04 10.56 -5.37 -0.06 -11.10 15 20 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 21 H 0.03 0.93 8.14 -2.39 -0.02 0.91 15 22 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.08 2.00 8.14 -2.39 -0.02 1.98 15 24 H 0.13 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.18 5.01 8.06 -2.91 -0.02 4.99 15 26 H 0.14 4.51 8.06 -2.91 -0.02 4.48 15 27 H 0.15 4.71 8.06 -2.91 -0.02 4.69 15 28 H 0.12 5.63 4.36 -2.91 -0.01 5.61 15 29 H 0.28 15.81 8.73 -92.71 -0.81 15.00 15 Total: -1.00 -68.42 250.47 5.54 -62.89 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.03 Total: 13.50 kcal Atomic # 6 Polarization: -72.01 SS G_CDS: 2.55 Total: -69.46 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.30 Total: -47.43 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.06 Total: -11.10 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 1.71 Total: 51.61 kcal Total: -68.42 5.54 -62.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259968404.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.689 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds