Wall clock time and date at job start Mon Mar 30 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39648 * 120.15550 * 20.25498 * 3 2 1 5 5 C 1.37926 * 119.84950 * 180.02562 * 4 3 2 6 6 C 1.38387 * 120.15120 * 359.97438 * 5 4 3 7 7 C 1.38342 * 120.30297 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.92298 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47521 * 199.99930 * 8 7 6 10 10 N 1.46908 * 109.47079 * 319.99966 * 8 7 6 11 11 C 1.52996 * 109.47310 * 79.99700 * 8 7 6 12 12 C 1.50702 * 109.47159 * 174.99934 * 11 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 8 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.37964 * 120.15223 * 0.26843 * 7 6 5 21 21 H 1.07999 * 120.07421 * 359.97438 * 4 3 2 22 22 H 1.07994 * 119.92490 * 179.97438 * 5 4 3 23 23 H 1.07992 * 119.84572 * 180.02562 * 6 5 4 24 24 H 1.00899 * 110.99551 * 296.04539 * 10 8 7 25 25 H 1.00902 * 111.00072 * 59.99841 * 10 8 7 26 26 H 1.09004 * 109.47066 * 55.00137 * 11 8 7 27 27 H 1.08994 * 109.47405 * 294.99967 * 11 8 7 28 28 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 29 29 H 1.08005 * 120.07927 * 179.72241 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.1319 -0.4180 5 6 4.6492 -1.1245 -0.4150 6 6 5.3374 0.0019 0.0006 7 6 4.6483 1.1273 0.4160 8 6 5.4064 2.3490 0.8673 9 1 4.7545 2.9776 1.4739 10 7 6.5695 1.9368 1.6645 11 6 5.8798 3.1363 -0.3561 12 6 6.5302 4.4194 0.0931 13 1 6.5993 4.6500 1.1459 14 6 7.0426 5.2960 -0.8398 15 7 6.9587 5.0149 -2.1218 16 14 7.8555 6.8827 -0.2827 17 1 9.3067 6.6480 -0.0722 18 1 7.6687 7.9263 -1.3225 19 1 7.2377 7.3354 0.9896 20 6 3.2687 1.1315 0.4237 21 1 2.7341 -2.0117 -0.7422 22 1 5.1933 -1.9998 -0.7376 23 1 6.4173 0.0024 0.0006 24 1 6.2805 1.4708 2.5115 25 1 7.1897 1.3526 1.1239 26 1 5.0257 3.3656 -0.9934 27 1 6.6007 2.5399 -0.9153 28 1 7.3188 5.6318 -2.7781 29 1 2.7319 2.0091 0.7525 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259992198.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:07 Heat of formation + Delta-G solvation = 23.956475 kcal Electronic energy + Delta-G solvation = -13284.586575 eV Core-core repulsion = 10978.332254 eV Total energy + Delta-G solvation = -2306.254321 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.65887 -37.88545 -36.64626 -34.50298 -32.24510 -31.26783 -30.13113 -26.23751 -24.84263 -23.52432 -21.84158 -19.11317 -18.32662 -17.34842 -16.92603 -16.45466 -15.91787 -15.53175 -15.12111 -14.83982 -14.35170 -14.16082 -14.14856 -13.83154 -13.36578 -13.10202 -12.81622 -12.53320 -12.41599 -12.27102 -11.91192 -11.46105 -11.17103 -10.47985 -9.89963 -9.72210 -9.31524 -8.09108 -6.14424 -0.18162 0.41798 1.45425 1.45634 1.55753 1.56583 1.92399 2.49272 2.82658 2.92205 3.24823 3.86771 3.95424 4.00314 4.17522 4.37332 4.50179 4.63650 4.84398 4.99241 5.07806 5.32748 5.38166 5.52612 5.54887 5.77329 5.89912 5.92694 6.34513 6.38784 6.57700 6.90839 7.00459 7.52211 9.02421 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.039163 B = 0.006526 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.785611 B = 4289.530287 C = 4551.757235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.282 3.718 3 C -0.042 4.042 4 C -0.069 4.069 5 C -0.109 4.109 6 C -0.090 4.090 7 C -0.117 4.117 8 C 0.145 3.855 9 H 0.071 0.929 10 N -0.829 5.829 11 C 0.043 3.957 12 C -0.506 4.506 13 H 0.061 0.939 14 C -0.005 4.005 15 N -0.938 5.938 16 Si 0.957 3.043 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.267 1.267 20 C -0.073 4.073 21 H 0.158 0.842 22 H 0.166 0.834 23 H 0.134 0.866 24 H 0.343 0.657 25 H 0.341 0.659 26 H -0.009 1.009 27 H -0.002 1.002 28 H 0.259 0.741 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -13.128 4.934 14.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.032 4.032 3 C -0.046 4.046 4 C -0.090 4.090 5 C -0.127 4.127 6 C -0.109 4.109 7 C -0.120 4.120 8 C 0.033 3.967 9 H 0.089 0.911 10 N -0.359 5.359 11 C 0.006 3.994 12 C -0.544 4.544 13 H 0.079 0.921 14 C -0.201 4.201 15 N -0.580 5.580 16 Si 0.783 3.217 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.095 4.095 21 H 0.175 0.825 22 H 0.184 0.816 23 H 0.152 0.848 24 H 0.156 0.844 25 H 0.155 0.845 26 H 0.010 0.990 27 H 0.016 0.984 28 H 0.067 0.933 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.056 -12.262 4.842 13.793 hybrid contribution 0.413 0.258 -0.294 0.569 sum -3.643 -12.003 4.548 13.343 Atomic orbital electron populations 1.81232 1.13126 1.09114 1.10626 1.25901 0.92763 0.92316 0.92252 1.16043 0.83365 0.97335 1.07827 1.21435 0.94653 0.96592 0.96304 1.21389 0.93509 0.98945 0.98832 1.21464 1.01138 0.92526 0.95803 1.21019 0.93947 0.97375 0.99614 1.20356 0.90317 0.91142 0.94929 0.91052 1.58700 1.17474 1.50426 1.09317 1.18968 0.94446 0.94052 0.91980 1.21539 1.35774 1.04031 0.93068 0.92118 1.25856 0.97426 1.01791 0.95032 1.70091 1.48309 1.38279 1.01310 0.85563 0.78919 0.79319 0.77877 1.20179 1.21451 1.19146 1.21126 0.93832 0.96900 0.97601 0.82465 0.81619 0.84779 0.84398 0.84464 0.99023 0.98373 0.93254 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.25 18.54 19.00 0.35 -13.90 15 2 C 0.28 7.51 15.33 88.33 1.35 8.87 15 3 C -0.04 -1.01 5.73 -21.36 -0.12 -1.13 15 4 C -0.07 -1.28 9.76 22.54 0.22 -1.06 15 5 C -0.11 -1.95 10.03 22.23 0.22 -1.73 15 6 C -0.09 -2.15 9.29 22.33 0.21 -1.94 15 7 C -0.12 -3.43 4.94 -19.91 -0.10 -3.53 15 8 C 0.14 5.26 2.93 44.16 0.13 5.39 15 9 H 0.07 2.69 8.00 -2.39 -0.02 2.67 15 10 N -0.83 -26.59 8.77 -171.80 -1.51 -28.10 15 11 C 0.04 2.10 4.60 29.85 0.14 2.24 15 12 C -0.51 -27.78 8.84 25.60 0.23 -27.56 15 13 H 0.06 3.29 7.74 -2.91 -0.02 3.27 15 14 C 0.00 -0.27 5.46 84.66 0.46 0.19 15 15 N -0.94 -56.33 13.29 21.45 0.28 -56.05 15 16 Si 0.96 44.57 29.54 68.60 2.03 46.60 15 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 18 H -0.29 -13.29 7.11 99.48 0.71 -12.58 15 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 20 C -0.07 -2.02 9.37 22.54 0.21 -1.81 15 21 H 0.16 1.98 8.06 -2.91 -0.02 1.96 15 22 H 0.17 1.81 8.06 -2.91 -0.02 1.79 15 23 H 0.13 2.97 6.65 -2.91 -0.02 2.96 15 24 H 0.34 8.77 9.06 -89.69 -0.81 7.96 15 25 H 0.34 10.12 7.34 -89.69 -0.66 9.47 15 26 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 15 27 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 15 28 H 0.26 14.78 8.31 -92.70 -0.77 14.01 15 29 H 0.13 3.50 8.03 -2.91 -0.02 3.47 15 Total: -1.00 -66.05 265.25 3.82 -62.23 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -0.29 Total: 11.28 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 2.95 Total: -22.06 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -0.87 Total: -98.04 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.05 3.82 -62.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259992198.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.186 kcal (2) G-P(sol) polarization free energy of solvation -66.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds