Wall clock time and date at job start Mon Mar 30 2020 03:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39655 * 120.15352 * 25.65034 * 3 2 1 5 5 C 1.37921 * 119.84399 * 179.97438 * 4 3 2 6 6 C 1.38389 * 120.15543 * 359.74275 * 5 4 3 7 7 C 1.38341 * 120.30081 * 0.51090 * 6 5 4 8 8 C 1.50698 * 119.92196 * 179.76291 * 7 6 5 9 9 H 1.09002 * 109.47408 * 179.72552 * 8 7 6 10 10 C 1.50707 * 109.46979 * 59.72828 * 8 7 6 11 11 H 1.07997 * 119.99896 * 269.08759 * 10 8 7 12 12 C 1.37870 * 119.99814 * 89.36164 * 10 8 7 13 13 N 1.31517 * 120.00484 * 6.36513 * 12 10 8 14 14 Si 1.86806 * 119.99865 * 186.35922 * 12 10 8 15 15 H 1.48494 * 109.46775 * 90.00447 * 14 12 10 16 16 H 1.48499 * 109.46909 * 210.00141 * 14 12 10 17 17 H 1.48496 * 109.46777 * 330.00245 * 14 12 10 18 18 C 1.52995 * 109.47490 * 299.72711 * 8 7 6 19 19 N 1.46898 * 109.47354 * 185.34266 * 18 8 7 20 20 C 1.37967 * 120.15033 * 359.49214 * 7 6 5 21 21 H 1.07996 * 120.07278 * 359.97438 * 4 3 2 22 22 H 1.08002 * 119.92384 * 180.02562 * 5 4 3 23 23 H 1.07997 * 119.85114 * 180.27977 * 6 5 4 24 24 H 0.96998 * 119.99967 * 180.02562 * 13 12 10 25 25 H 1.09000 * 109.46948 * 305.34262 * 18 8 7 26 26 H 1.09006 * 109.47161 * 65.34124 * 18 8 7 27 27 H 1.00890 * 111.00053 * 56.04680 * 19 18 8 28 28 H 1.00902 * 110.99820 * 180.02562 * 19 18 8 29 29 H 1.08004 * 120.07426 * 180.27209 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 -1.0876 -0.5227 5 6 4.6492 -1.0801 -0.5200 6 6 5.3374 0.0048 -0.0057 7 6 4.6484 1.0839 0.5184 8 6 5.4065 2.2585 1.0811 9 1 4.7011 3.0077 1.4407 10 6 6.2724 2.8599 0.0042 11 1 7.2878 2.5162 -0.1269 12 6 5.7701 3.8527 -0.8099 13 7 4.5821 4.3628 -0.5687 14 14 6.7771 4.4737 -2.2557 15 1 6.4601 3.6679 -3.4620 16 1 6.4483 5.8990 -2.5120 17 1 8.2231 4.3478 -1.9421 18 6 6.2871 1.7890 2.2407 19 7 6.9276 2.9511 2.8709 20 6 3.2687 1.0895 0.5220 21 1 2.7341 -1.9331 -0.9281 22 1 5.1934 -1.9208 -0.9243 23 1 6.4174 0.0076 -0.0102 24 1 4.2287 5.0610 -1.1417 25 1 5.6728 1.2695 2.9762 26 1 7.0535 1.1116 1.8639 27 1 6.2392 3.6248 3.1711 28 1 7.5155 2.6670 3.6402 29 1 2.7320 1.9345 0.9275 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057763.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:12 Heat of formation + Delta-G solvation = 26.305798 kcal Electronic energy + Delta-G solvation = -13631.963232 eV Core-core repulsion = 11325.810785 eV Total energy + Delta-G solvation = -2306.152447 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.33468 -37.71478 -36.53428 -34.14343 -32.51820 -31.98150 -28.94037 -26.05500 -24.76382 -23.18587 -21.78637 -19.27186 -18.13730 -17.00901 -16.55746 -16.28388 -16.07370 -15.33669 -14.97320 -14.85961 -14.30338 -14.03839 -13.96101 -13.62502 -13.50894 -13.04467 -12.78294 -12.55310 -12.36330 -12.20338 -11.73976 -11.32860 -10.94079 -10.44807 -9.67747 -9.37361 -9.17299 -8.01553 -6.04008 0.01838 0.71496 1.46290 1.49327 1.56884 1.61592 2.06027 2.52405 2.96289 3.13892 3.33487 4.02293 4.17318 4.26478 4.55899 4.61638 4.68434 4.75108 4.86925 5.11095 5.19824 5.34391 5.55492 5.63866 5.70280 5.87252 6.08085 6.20663 6.39465 6.46499 6.62342 6.94453 7.05829 7.59185 9.06348 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.023471 B = 0.010130 C = 0.008864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.688982 B = 2763.349549 C = 3157.967053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.285 3.715 3 C -0.053 4.053 4 C -0.084 4.084 5 C -0.116 4.116 6 C -0.086 4.086 7 C -0.050 4.050 8 C 0.063 3.937 9 H 0.028 0.972 10 C -0.474 4.474 11 H 0.054 0.946 12 C 0.016 3.984 13 N -0.923 5.923 14 Si 0.939 3.061 15 H -0.280 1.280 16 H -0.295 1.295 17 H -0.268 1.268 18 C 0.087 3.913 19 N -0.845 5.845 20 C -0.083 4.083 21 H 0.153 0.847 22 H 0.164 0.836 23 H 0.131 0.869 24 H 0.255 0.745 25 H 0.012 0.988 26 H 0.064 0.936 27 H 0.336 0.664 28 H 0.340 0.660 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.122 -9.947 2.422 10.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.029 4.029 3 C -0.056 4.056 4 C -0.105 4.105 5 C -0.134 4.134 6 C -0.105 4.105 7 C -0.051 4.051 8 C 0.044 3.956 9 H 0.047 0.953 10 C -0.512 4.512 11 H 0.072 0.928 12 C -0.182 4.182 13 N -0.563 5.563 14 Si 0.767 3.233 15 H -0.206 1.206 16 H -0.222 1.222 17 H -0.192 1.192 18 C -0.044 4.044 19 N -0.375 5.375 20 C -0.104 4.104 21 H 0.171 0.829 22 H 0.181 0.819 23 H 0.149 0.851 24 H 0.064 0.936 25 H 0.030 0.970 26 H 0.083 0.917 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.596 -9.700 1.650 9.968 hybrid contribution 0.021 0.818 0.030 0.819 sum 1.617 -8.882 1.680 9.183 Atomic orbital electron populations 1.81157 1.13008 1.09731 1.11046 1.26030 0.92914 0.91934 0.91977 1.16090 0.83239 0.98482 1.07798 1.21267 0.94716 0.96554 0.97944 1.21368 0.93386 0.99101 0.99506 1.21437 1.00946 0.92525 0.95562 1.20517 0.92553 0.95661 0.96366 1.17961 0.93811 0.90679 0.93185 0.95330 1.21039 0.97761 1.18052 1.14367 0.92757 1.25560 0.95920 0.96821 0.99942 1.70032 1.19051 1.28109 1.39097 0.85838 0.79726 0.76955 0.80805 1.20613 1.22156 1.19226 1.21711 0.96142 0.91658 0.94870 1.58433 1.27456 1.15515 1.36104 1.21017 0.94561 0.95942 0.98910 0.82909 0.81862 0.85064 0.93640 0.96998 0.91734 0.85241 0.84728 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.58 18.54 19.00 0.35 -17.23 15 2 C 0.29 9.83 15.33 88.33 1.35 11.18 15 3 C -0.05 -1.73 5.73 -21.36 -0.12 -1.85 15 4 C -0.08 -2.21 9.76 22.54 0.22 -1.99 15 5 C -0.12 -2.92 10.03 22.23 0.22 -2.70 15 6 C -0.09 -2.77 8.86 22.33 0.20 -2.57 15 7 C -0.05 -1.95 4.77 -19.90 -0.09 -2.04 15 8 C 0.06 2.76 2.17 -12.29 -0.03 2.73 15 9 H 0.03 1.45 7.12 -2.39 -0.02 1.44 15 10 C -0.47 -23.58 7.65 25.60 0.20 -23.38 15 11 H 0.05 2.70 7.82 -2.91 -0.02 2.68 15 12 C 0.02 0.82 5.45 84.65 0.46 1.28 15 13 N -0.92 -51.87 12.85 21.45 0.28 -51.60 15 14 Si 0.94 42.77 29.54 68.60 2.03 44.79 15 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 16 H -0.30 -13.64 7.11 99.48 0.71 -12.93 15 17 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 18 C 0.09 3.15 5.90 86.30 0.51 3.66 15 19 N -0.85 -29.46 9.35 -186.72 -1.75 -31.21 15 20 C -0.08 -3.23 9.38 22.54 0.21 -3.02 15 21 H 0.15 2.97 8.06 -2.91 -0.02 2.95 15 22 H 0.16 2.78 8.06 -2.91 -0.02 2.76 15 23 H 0.13 4.00 7.64 -2.91 -0.02 3.98 15 24 H 0.25 14.02 8.31 -92.71 -0.77 13.25 15 25 H 0.01 0.40 8.14 -2.39 -0.02 0.38 15 26 H 0.06 2.23 7.59 -2.38 -0.02 2.21 15 27 H 0.34 11.80 8.99 -89.70 -0.81 10.99 15 28 H 0.34 9.37 9.08 -89.69 -0.81 8.56 15 29 H 0.10 4.33 7.94 -2.91 -0.02 4.31 15 Total: -1.00 -59.89 265.36 3.60 -56.29 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.44 Total: 17.63 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 3.13 Total: -18.68 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -1.12 Total: -100.03 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -59.89 3.60 -56.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057763.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.599 kcal (2) G-P(sol) polarization free energy of solvation -59.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds