Wall clock time and date at job start Mon Mar 30 2020 02:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.50701 * 109.47211 * 179.97438 * 10 9 7 12 12 C 1.37755 * 120.20198 * 264.72805 * 11 10 9 13 13 C 1.38718 * 120.27511 * 179.77351 * 12 11 10 14 14 C 1.37868 * 120.68841 * 0.50470 * 13 12 11 15 15 C 1.38879 * 119.95878 * 359.75171 * 14 13 12 16 16 O 1.34841 * 133.42363 * 179.97438 * 15 14 13 17 17 C 1.34441 * 110.89414 * 179.97438 * 16 15 14 18 18 C 1.33987 * 110.16637 * 0.02562 * 17 16 15 19 19 C 1.39385 * 120.19591 * 85.00720 * 11 10 9 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 24 24 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 25 25 H 1.08005 * 119.86418 * 359.97438 * 12 11 10 26 26 H 1.07996 * 119.65999 * 180.25500 * 13 12 11 27 27 H 1.08004 * 120.01716 * 179.72453 * 14 13 12 28 28 H 1.07999 * 124.91478 * 179.97438 * 17 16 15 29 29 H 1.07999 * 126.90968 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4920 -4.9671 0.0170 12 6 1.2408 -5.6163 1.2057 13 6 0.5434 -6.8154 1.2139 14 6 0.1009 -7.3801 0.0366 15 6 0.3481 -6.7446 -1.1733 16 8 0.0501 -7.0420 -2.4543 17 6 0.5142 -6.0940 -3.2870 18 6 1.1373 -5.1331 -2.5916 19 6 1.0501 -5.5275 -1.1803 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 2.8721 -3.6081 -0.8798 24 1 2.8721 -3.6002 0.9002 25 1 1.5856 -5.1884 2.1355 26 1 0.3484 -7.3138 2.1519 27 1 -0.4373 -8.3163 0.0553 28 1 0.4018 -6.1058 -4.3610 29 1 1.6087 -4.2465 -2.9893 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122383.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:42 Heat of formation + Delta-G solvation = -7.785229 kcal Electronic energy + Delta-G solvation = -13557.071095 eV Core-core repulsion = 11217.147599 eV Total energy + Delta-G solvation = -2339.923496 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.29525 -39.10443 -35.92699 -34.21273 -32.93241 -30.76045 -29.97373 -26.90051 -24.17128 -23.30111 -22.90430 -21.14847 -18.60887 -18.17034 -17.82249 -17.00099 -16.53674 -16.46479 -15.39717 -14.88296 -14.35195 -14.27763 -13.97105 -13.59361 -13.46106 -12.97578 -12.89061 -12.68964 -12.49855 -11.98372 -11.77917 -11.56782 -11.18834 -10.94094 -10.56906 -9.51023 -8.96931 -8.20581 -6.33698 0.04328 0.43848 1.39551 1.43009 1.50060 1.51222 1.93176 2.40031 2.78886 3.11834 3.64403 3.81105 4.03199 4.22827 4.32313 4.46158 4.55588 4.65793 4.79063 4.83574 4.94992 5.14113 5.30681 5.40307 5.45364 5.51873 5.52904 5.76153 5.81448 5.83014 6.19963 6.25862 6.82518 7.35950 8.90786 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.040651 B = 0.007121 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.628675 B = 3931.288226 C = 4310.036092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.043 3.957 10 C -0.064 4.064 11 C -0.045 4.045 12 C -0.151 4.151 13 C -0.084 4.084 14 C -0.123 4.123 15 C 0.028 3.972 16 O -0.204 6.204 17 C 0.014 3.986 18 C -0.233 4.233 19 C -0.158 4.158 20 H 0.264 0.736 21 H -0.012 1.012 22 H -0.014 1.014 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.137 0.863 26 H 0.172 0.828 27 H 0.159 0.841 28 H 0.254 0.746 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -13.727 -2.270 14.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.006 3.994 10 C -0.101 4.101 11 C -0.045 4.045 12 C -0.169 4.169 13 C -0.102 4.102 14 C -0.141 4.141 15 C -0.019 4.019 16 O -0.106 6.106 17 C -0.049 4.049 18 C -0.252 4.252 19 C -0.159 4.159 20 H 0.073 0.927 21 H 0.006 0.994 22 H 0.004 0.996 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.155 0.845 26 H 0.189 0.811 27 H 0.177 0.823 28 H 0.269 0.731 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.359 -13.856 -2.341 14.118 hybrid contribution 0.259 1.425 -0.115 1.452 sum 1.617 -12.431 -2.456 12.774 Atomic orbital electron populations 1.70113 1.07966 1.27899 1.51435 1.26004 0.95723 1.03438 0.94519 0.85467 0.78236 0.77827 0.79313 1.19058 1.20847 1.18972 1.21651 0.93607 0.92066 1.50961 0.91867 1.18839 0.93818 0.92246 0.94524 1.20533 0.97341 0.90718 1.01551 1.19800 0.97046 0.95595 0.92053 1.21247 1.01717 0.96753 0.97228 1.21290 0.95922 0.94619 0.98363 1.20245 1.04561 1.02151 0.87128 1.20036 1.00688 0.95973 0.85237 1.83963 1.66509 1.45477 1.14626 1.24659 0.96479 0.86605 0.97200 1.22771 1.08033 1.02894 0.91500 1.20174 1.03915 0.97041 0.94786 0.92736 0.99372 0.99566 0.92330 0.91299 0.84495 0.81072 0.82326 0.73053 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.11 13.29 21.45 0.28 -57.83 15 2 C 0.00 0.06 5.46 84.65 0.46 0.52 15 3 Si 0.97 44.59 29.54 68.60 2.03 46.61 15 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 15 7 C -0.55 -31.67 9.11 25.60 0.23 -31.44 15 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 15 9 C 0.04 2.37 4.96 29.85 0.15 2.52 15 10 C -0.06 -2.85 5.22 29.85 0.16 -2.69 15 11 C -0.04 -1.79 5.16 -19.70 -0.10 -1.89 15 12 C -0.15 -5.06 9.67 22.27 0.22 -4.84 15 13 C -0.08 -2.24 10.01 22.30 0.22 -2.02 15 14 C -0.12 -3.39 10.06 22.34 0.22 -3.16 15 15 C 0.03 0.93 7.41 22.98 0.17 1.10 15 16 O -0.20 -6.24 10.58 -9.18 -0.10 -6.34 15 17 C 0.01 0.38 11.96 66.85 0.80 1.18 15 18 C -0.23 -8.03 10.97 23.54 0.26 -7.77 15 19 C -0.16 -6.11 6.16 -20.21 -0.12 -6.23 15 20 H 0.26 15.40 8.31 -92.71 -0.77 14.63 15 21 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 15 22 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 15 23 H 0.06 2.55 8.07 -2.39 -0.02 2.53 15 24 H 0.07 2.87 8.05 -2.38 -0.02 2.85 15 25 H 0.14 4.15 8.06 -2.91 -0.02 4.13 15 26 H 0.17 3.04 8.06 -2.91 -0.02 3.02 15 27 H 0.16 3.21 8.06 -2.91 -0.02 3.19 15 28 H 0.25 3.83 8.06 -2.91 -0.02 3.80 15 29 H 0.15 5.23 8.06 -2.91 -0.02 5.20 15 Total: -1.00 -71.11 259.61 6.01 -65.10 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.13 Total: 7.18 kcal Atomic # 6 Polarization: -57.40 SS G_CDS: 2.66 Total: -54.74 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.28 Total: -57.83 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.10 Total: -6.34 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -71.11 6.01 -65.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122383.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.317 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds