Wall clock time and date at job start Mon Mar 30 2020 02:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47203 * 2 1 4 4 C 1.53002 * 109.47147 * 240.00057 * 2 1 3 5 5 O 1.42899 * 109.47087 * 119.99842 * 2 1 3 6 6 C 1.42909 * 113.99711 * 54.67984 * 5 2 1 7 7 C 1.50697 * 112.49570 * 54.46801 * 6 5 2 8 8 H 1.08004 * 119.99964 * 246.04846 * 7 6 5 9 9 C 1.37876 * 120.00231 * 65.77164 * 7 6 5 10 10 N 1.31516 * 120.00138 * 356.53019 * 9 7 6 11 11 Si 1.86798 * 120.00035 * 176.53229 * 9 7 6 12 12 H 1.48506 * 109.47178 * 59.99855 * 11 9 7 13 13 H 1.48505 * 109.47289 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47381 * 300.00073 * 11 9 7 15 15 C 1.53042 * 113.14909 * 184.24960 * 6 5 2 16 16 S 1.81503 * 89.86148 * 82.41475 * 15 6 5 17 17 C 1.53040 * 113.15091 * 284.67828 * 6 5 2 18 18 H 1.09003 * 109.47293 * 296.49932 * 1 2 3 19 19 H 1.09001 * 109.46977 * 56.49771 * 1 2 3 20 20 H 1.08998 * 109.47618 * 176.49736 * 1 2 3 21 21 H 1.09002 * 109.46819 * 179.97438 * 3 2 1 22 22 H 1.08993 * 109.47212 * 300.00184 * 3 2 1 23 23 H 1.09004 * 109.46794 * 59.99911 * 3 2 1 24 24 H 1.09000 * 109.47179 * 317.62239 * 4 2 1 25 25 H 1.08998 * 109.46804 * 77.62547 * 4 2 1 26 26 H 1.09000 * 109.46916 * 197.62261 * 4 2 1 27 27 H 0.96996 * 120.00157 * 184.99081 * 10 9 7 28 28 H 1.09004 * 113.14749 * 197.65551 * 15 6 5 29 29 H 1.09002 * 113.15197 * 327.14547 * 15 6 5 30 30 H 1.09009 * 113.14699 * 32.86066 * 17 6 5 31 31 H 1.09004 * 113.14714 * 162.29808 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6736 1.1668 6 6 1.4884 -1.9959 1.3266 7 6 1.7253 -2.8585 0.1138 8 1 0.8883 -3.2042 -0.4747 9 6 3.0108 -3.2015 -0.2478 10 7 4.0336 -2.7206 0.4248 11 14 3.2998 -4.3492 -1.6929 12 1 2.7290 -3.7475 -2.9248 13 1 4.7587 -4.5585 -1.8749 14 1 2.6413 -5.6538 -1.4284 15 6 1.9286 -2.6606 2.6330 16 16 0.6008 -1.7939 3.5163 17 6 0.0355 -2.0191 1.8071 18 1 -0.3634 0.4585 0.9197 19 1 -0.3633 0.5673 -0.8569 20 1 -0.3634 -1.0257 -0.0628 21 1 3.1300 1.4425 0.0005 22 1 1.6767 1.9564 -0.8899 23 1 1.6766 1.9563 0.8900 24 1 1.4454 -1.6189 -1.4188 25 1 1.9534 -0.0599 -2.1113 26 1 3.0845 -0.9987 -1.1076 27 1 4.9386 -2.9029 0.1272 28 1 1.8030 -3.7434 2.6264 29 1 2.9255 -2.3578 2.9532 30 1 -0.5520 -1.1792 1.4359 31 1 -0.4557 -2.9777 1.6403 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260132736.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:39 Heat of formation + Delta-G solvation = -18.948691 kcal Electronic energy + Delta-G solvation = -14064.743721 eV Core-core repulsion = 11859.780092 eV Total energy + Delta-G solvation = -2204.963629 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.29478 -35.97091 -34.23785 -32.74544 -28.77998 -28.57597 -26.67308 -26.19177 -22.05953 -20.64201 -18.59195 -17.12160 -16.55354 -16.24750 -16.06628 -15.44090 -14.99063 -14.46730 -13.82070 -13.74799 -13.55766 -13.03140 -12.87936 -12.81262 -12.61644 -12.49997 -12.37902 -12.18261 -11.94076 -11.65704 -11.14272 -10.87992 -10.63153 -10.24054 -9.79347 -8.59040 -8.02855 -6.14760 1.11867 1.31125 1.47049 1.50954 1.54075 2.45071 3.09547 3.37604 4.08879 4.30552 4.36161 4.47266 4.53469 4.67583 4.70649 4.78158 4.86830 4.97751 5.03892 5.12023 5.19559 5.31718 5.38615 5.52806 5.71237 5.78646 6.00993 6.14645 6.74688 7.16188 7.48847 8.98234 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.026806 B = 0.016465 C = 0.012256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.288445 B = 1700.137356 C = 2283.985968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.115 3.885 3 C -0.130 4.130 4 C -0.156 4.156 5 O -0.368 6.368 6 C 0.247 3.753 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.055 3.945 10 N -0.885 5.885 11 Si 0.930 3.070 12 H -0.265 1.265 13 H -0.293 1.293 14 H -0.271 1.271 15 C -0.018 4.018 16 S -0.396 6.396 17 C -0.101 4.101 18 H 0.053 0.947 19 H 0.075 0.925 20 H 0.068 0.932 21 H 0.042 0.958 22 H 0.085 0.915 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.260 0.740 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 2.866 -3.339 6.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.076 3.924 3 C -0.187 4.187 4 C -0.213 4.213 5 O -0.288 6.288 6 C 0.206 3.794 7 C -0.577 4.577 8 H 0.090 0.910 9 C -0.150 4.150 10 N -0.521 5.521 11 Si 0.756 3.244 12 H -0.190 1.190 13 H -0.219 1.219 14 H -0.196 1.196 15 C -0.166 4.166 16 S -0.171 6.171 17 C -0.248 4.248 18 H 0.072 0.928 19 H 0.094 0.906 20 H 0.087 0.913 21 H 0.061 0.939 22 H 0.104 0.896 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.416 3.455 -1.809 6.674 hybrid contribution 0.792 -1.282 -1.510 2.133 sum -4.625 2.173 -3.319 6.093 Atomic orbital electron populations 1.22753 0.96186 1.02467 1.01641 1.21236 0.92832 0.91981 0.86370 1.21748 1.00725 0.94012 1.02245 1.22633 1.02318 1.00632 0.95736 1.87857 1.69949 1.27542 1.43456 1.19232 0.85142 0.82425 0.92555 1.21149 0.92966 1.31592 1.12018 0.91024 1.25410 0.95882 0.95766 0.97892 1.70121 0.98731 1.43976 1.39246 0.86063 0.76763 0.80366 0.81255 1.18984 1.21930 1.19593 1.24356 0.97373 1.00414 0.94481 1.88326 1.28148 1.78094 1.22495 1.26073 1.04501 1.06356 0.87876 0.92774 0.90639 0.91347 0.93900 0.89615 0.92669 0.90372 0.94377 0.94070 0.93024 0.88608 0.91694 0.86117 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 6.72 71.98 0.48 -5.22 16 2 C 0.12 4.51 1.11 -10.79 -0.01 4.50 16 3 C -0.13 -4.39 8.77 71.98 0.63 -3.76 16 4 C -0.16 -6.35 6.99 71.98 0.50 -5.85 16 5 O -0.37 -17.47 9.51 -148.98 -1.42 -18.89 16 6 C 0.25 11.26 0.26 -11.51 0.00 11.26 16 7 C -0.54 -25.19 4.58 25.60 0.12 -25.07 16 8 H 0.07 3.24 7.48 -2.91 -0.02 3.22 16 9 C 0.05 2.66 3.32 84.65 0.28 2.94 16 10 N -0.88 -46.65 12.21 21.45 0.26 -46.39 16 11 Si 0.93 39.06 29.54 68.60 2.03 41.09 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 13 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 15 C -0.02 -0.85 6.68 72.00 0.48 -0.37 16 16 S -0.40 -17.10 24.58 -56.49 -1.39 -18.49 16 17 C -0.10 -4.01 5.99 72.00 0.43 -3.58 16 18 H 0.05 1.76 7.31 -2.39 -0.02 1.74 16 19 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 20 H 0.07 2.33 5.22 -2.39 -0.01 2.32 16 21 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.08 3.30 5.09 -2.39 -0.01 3.29 16 25 H 0.04 1.32 8.01 -2.39 -0.02 1.30 16 26 H 0.04 1.93 6.30 -2.39 -0.02 1.91 16 27 H 0.26 13.43 8.32 -92.71 -0.77 12.66 16 28 H 0.10 4.35 8.11 -2.38 -0.02 4.33 16 29 H 0.06 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.12 4.40 3.87 -2.38 -0.01 4.40 16 31 H 0.10 3.83 8.11 -2.39 -0.02 3.81 16 Total: -1.00 -53.81 250.11 3.50 -50.31 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 1.11 Total: 17.51 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 2.91 Total: -25.14 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.26 Total: -46.39 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -1.42 Total: -18.89 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Atomic # 16 Polarization: -17.10 SS G_CDS: -1.39 Total: -18.49 kcal Total: -53.81 3.50 -50.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260132736.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.360 kcal (2) G-P(sol) polarization free energy of solvation -53.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds