Wall clock time and date at job start Mon Mar 30 2020 02:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47099 * 2 1 4 4 C 1.33932 * 124.87789 * 89.72286 * 3 2 1 5 5 C 1.46916 * 106.14913 * 179.91623 * 4 3 2 6 6 C 1.38849 * 134.23699 * 180.02562 * 5 4 3 7 7 C 1.40431 * 119.24996 * 180.32000 * 6 5 4 8 8 C 1.41361 * 120.13219 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00074 * 335.03743 * 8 7 6 10 10 C 1.39873 * 119.99918 * 155.02897 * 8 7 6 11 11 N 1.30876 * 120.00379 * 342.12860 * 10 8 7 12 12 Si 1.86808 * 119.99746 * 162.12396 * 10 8 7 13 13 H 1.48500 * 109.46951 * 94.65136 * 12 10 8 14 14 H 1.48498 * 109.47201 * 214.64931 * 12 10 8 15 15 H 1.48498 * 109.47179 * 334.64879 * 12 10 8 16 16 C 1.41076 * 119.73569 * 0.02562 * 7 6 5 17 17 C 1.36115 * 120.58818 * 359.97438 * 16 7 6 18 18 C 1.39474 * 120.41944 * 0.03325 * 17 16 7 19 19 O 1.34447 * 124.87513 * 270.02313 * 3 2 1 20 20 H 1.09002 * 109.47024 * 299.99858 * 1 2 3 21 21 H 1.08996 * 109.47191 * 60.00060 * 1 2 3 22 22 H 1.08996 * 109.47589 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46581 * 120.00154 * 2 1 3 24 24 H 1.08997 * 109.46633 * 239.99525 * 2 1 3 25 25 H 1.08007 * 126.92546 * 0.03743 * 4 3 2 26 26 H 1.08004 * 120.37207 * 0.34285 * 6 5 4 27 27 H 0.97001 * 120.00335 * 179.97438 * 11 10 8 28 28 H 1.08005 * 119.70718 * 179.97438 * 16 7 6 29 29 H 1.08006 * 119.79274 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2826 2.1446 1.0987 5 6 2.7505 3.4549 0.6270 6 6 3.1612 4.6215 1.2581 7 6 3.5495 5.7232 0.4786 8 6 3.9713 6.9199 1.1017 9 1 3.6360 7.1558 2.1009 10 6 4.8232 7.7985 0.4242 11 7 5.5051 7.3804 -0.6117 12 14 4.9873 9.5687 0.9978 13 1 6.1553 9.6880 1.9072 14 1 5.1831 10.4540 -0.1782 15 1 3.7541 9.9712 1.7205 16 6 3.5168 5.6309 -0.9287 17 6 3.1126 4.4830 -1.5384 18 6 2.7236 3.3795 -0.7793 19 8 2.2882 2.1457 -1.1030 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 2.1661 1.8280 2.1248 26 1 3.1822 4.6808 2.3363 27 1 6.0956 7.9897 -1.0817 28 1 3.8151 6.4786 -1.5278 29 1 3.0930 4.4263 -2.6168 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178053.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:10 Heat of formation + Delta-G solvation = 3.884979 kcal Electronic energy + Delta-G solvation = -13565.346551 eV Core-core repulsion = 11225.929113 eV Total energy + Delta-G solvation = -2339.417438 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.16044 -36.69339 -33.89042 -33.32646 -31.03735 -29.54131 -27.51278 -25.31044 -23.42544 -21.12709 -20.43545 -19.77591 -17.39646 -16.11434 -15.35913 -15.24212 -14.93689 -14.20209 -13.69868 -13.09250 -12.71670 -12.47732 -12.18008 -12.00158 -11.76555 -11.34674 -11.11983 -11.04777 -10.93921 -10.78585 -10.39140 -10.01068 -9.39834 -9.13605 -8.94673 -7.27580 -7.02016 -6.77153 -4.35717 2.21981 2.73307 3.06007 3.09817 3.17463 3.49845 3.76329 3.91473 4.54961 5.07808 5.27137 5.40412 5.58894 5.71236 5.85912 5.88696 6.00507 6.16734 6.25967 6.30945 6.69669 6.84798 6.95470 7.13695 7.16540 7.41714 7.62525 7.77190 7.92025 8.05869 8.30517 8.52420 8.83412 8.88067 10.15256 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.076398 B = 0.006578 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.413268 B = 4255.391527 C = 4479.591609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 C 0.005 3.995 4 C -0.223 4.223 5 C -0.090 4.090 6 C -0.211 4.211 7 C 0.102 3.898 8 C -0.461 4.461 9 H 0.080 0.920 10 C 0.075 3.925 11 N -0.799 5.799 12 Si 0.909 3.091 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.260 1.260 16 C -0.113 4.113 17 C -0.100 4.100 18 C -0.056 4.056 19 O -0.206 6.206 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.137 0.863 26 H 0.097 0.903 27 H 0.282 0.718 28 H 0.132 0.868 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 -6.460 0.349 7.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.043 4.043 4 C -0.243 4.243 5 C -0.091 4.091 6 C -0.232 4.232 7 C 0.100 3.900 8 C -0.491 4.491 9 H 0.098 0.902 10 C -0.142 4.142 11 N -0.425 5.425 12 Si 0.734 3.266 13 H -0.196 1.196 14 H -0.200 1.200 15 H -0.184 1.184 16 C -0.132 4.132 17 C -0.119 4.119 18 C -0.102 4.102 19 O -0.109 6.109 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.155 0.845 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.150 0.850 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.479 -6.448 -0.100 7.852 hybrid contribution 0.293 0.850 0.389 0.980 sum -4.185 -5.598 0.290 6.996 Atomic orbital electron populations 1.21777 0.94494 1.01532 1.02725 1.20018 0.95991 0.88605 1.03300 1.21852 1.03274 0.94265 0.84897 1.22072 1.09837 0.94496 0.97877 1.19583 1.02525 0.94248 0.92726 1.20309 1.13386 0.91768 0.97698 1.17503 0.89390 0.91757 0.91364 1.19495 1.25116 1.02443 1.02005 0.90225 1.25910 0.93553 1.00651 0.94070 1.69820 1.18898 1.36593 1.17162 0.86283 0.79639 0.81519 0.79207 1.19560 1.20005 1.18401 1.21046 1.00334 0.96263 0.95525 1.19335 1.04329 0.90816 0.97411 1.19374 1.11624 0.85381 0.93792 1.83690 1.70954 1.23018 1.33268 0.92247 0.92336 0.92225 0.89535 0.90636 0.84529 0.88484 0.90754 0.85026 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.90 37.16 0.37 -1.37 15 2 C -0.04 -0.57 6.44 -27.88 -0.18 -0.74 15 3 C 0.01 0.10 6.48 -35.83 -0.23 -0.13 15 4 C -0.22 -4.64 11.01 -37.58 -0.41 -5.06 15 5 C -0.09 -2.24 6.38 -105.17 -0.67 -2.91 15 6 C -0.21 -5.50 9.86 -38.53 -0.38 -5.88 15 7 C 0.10 2.77 5.57 -106.81 -0.59 2.18 15 8 C -0.46 -12.23 9.04 -37.78 -0.34 -12.57 15 9 H 0.08 2.03 7.91 -52.48 -0.41 1.62 15 10 C 0.08 1.87 5.13 -17.35 -0.09 1.79 15 11 N -0.80 -20.42 10.98 55.54 0.61 -19.81 15 12 Si 0.91 18.47 29.60 -169.99 -5.03 13.44 15 13 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 14 H -0.28 -5.44 7.11 56.52 0.40 -5.04 15 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 16 C -0.11 -2.94 8.61 -39.27 -0.34 -3.28 15 17 C -0.10 -2.46 9.99 -39.88 -0.40 -2.86 15 18 C -0.06 -1.40 7.43 -38.13 -0.28 -1.68 15 19 O -0.21 -4.66 10.57 4.00 0.04 -4.62 15 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.09 0.99 8.14 -51.93 -0.42 0.56 15 24 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 25 H 0.14 2.43 8.06 -52.48 -0.42 2.01 15 26 H 0.10 2.38 8.06 -52.48 -0.42 1.96 15 27 H 0.28 6.52 8.30 -40.82 -0.34 6.18 15 28 H 0.13 3.43 6.16 -52.48 -0.32 3.11 15 29 H 0.10 2.17 8.06 -52.48 -0.42 1.75 15 LS Contribution 255.53 15.07 3.85 3.85 Total: -1.00 -28.85 255.53 -7.34 -36.18 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -3.25 Total: 3.49 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: -3.55 Total: -32.53 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.61 Total: -19.81 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: 0.04 Total: -4.62 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.85 -7.34 -36.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178053.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.069 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds