Wall clock time and date at job start Mon Mar 30 2020 02:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47099 * 2 1 4 4 C 1.33932 * 124.87789 * 89.72286 * 3 2 1 5 5 C 1.46916 * 106.14913 * 179.91623 * 4 3 2 6 6 C 1.38849 * 134.23699 * 180.02562 * 5 4 3 7 7 C 1.40431 * 119.24996 * 180.32000 * 6 5 4 8 8 C 1.41361 * 120.13219 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00074 * 335.03743 * 8 7 6 10 10 C 1.39873 * 119.99918 * 155.02897 * 8 7 6 11 11 N 1.30876 * 120.00379 * 342.12860 * 10 8 7 12 12 Si 1.86808 * 119.99746 * 162.12396 * 10 8 7 13 13 H 1.48500 * 109.46951 * 94.65136 * 12 10 8 14 14 H 1.48498 * 109.47201 * 214.64931 * 12 10 8 15 15 H 1.48498 * 109.47179 * 334.64879 * 12 10 8 16 16 C 1.41076 * 119.73569 * 0.02562 * 7 6 5 17 17 C 1.36115 * 120.58818 * 359.97438 * 16 7 6 18 18 C 1.39474 * 120.41944 * 0.03325 * 17 16 7 19 19 O 1.34447 * 124.87513 * 270.02313 * 3 2 1 20 20 H 1.09002 * 109.47024 * 299.99858 * 1 2 3 21 21 H 1.08996 * 109.47191 * 60.00060 * 1 2 3 22 22 H 1.08996 * 109.47589 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46581 * 120.00154 * 2 1 3 24 24 H 1.08997 * 109.46633 * 239.99525 * 2 1 3 25 25 H 1.08007 * 126.92546 * 0.03743 * 4 3 2 26 26 H 1.08004 * 120.37207 * 0.34285 * 6 5 4 27 27 H 0.97001 * 120.00335 * 179.97438 * 11 10 8 28 28 H 1.08005 * 119.70718 * 179.97438 * 16 7 6 29 29 H 1.08006 * 119.79274 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2826 2.1446 1.0987 5 6 2.7505 3.4549 0.6270 6 6 3.1612 4.6215 1.2581 7 6 3.5495 5.7232 0.4786 8 6 3.9713 6.9199 1.1017 9 1 3.6360 7.1558 2.1009 10 6 4.8232 7.7985 0.4242 11 7 5.5051 7.3804 -0.6117 12 14 4.9873 9.5687 0.9978 13 1 6.1553 9.6880 1.9072 14 1 5.1831 10.4540 -0.1782 15 1 3.7541 9.9712 1.7205 16 6 3.5168 5.6309 -0.9287 17 6 3.1126 4.4830 -1.5384 18 6 2.7236 3.3795 -0.7793 19 8 2.2882 2.1457 -1.1030 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 2.1661 1.8280 2.1248 26 1 3.1822 4.6808 2.3363 27 1 6.0956 7.9897 -1.0817 28 1 3.8151 6.4786 -1.5278 29 1 3.0930 4.4263 -2.6168 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260178053.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:10 Heat of formation + Delta-G solvation = -11.225661 kcal Electronic energy + Delta-G solvation = -13566.001797 eV Core-core repulsion = 11225.929113 eV Total energy + Delta-G solvation = -2340.072684 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.91567 -38.59631 -35.39794 -34.99642 -32.72225 -31.48822 -29.15075 -27.20708 -24.74640 -22.99085 -22.25544 -21.41257 -19.27601 -17.95066 -17.11590 -16.95381 -16.63869 -15.59560 -15.08021 -14.76608 -14.55133 -13.96009 -13.73128 -13.71493 -13.21561 -12.98486 -12.83736 -12.62147 -12.34845 -12.31338 -11.97864 -11.73658 -11.29100 -11.02054 -10.70637 -9.24744 -8.84009 -8.64385 -6.36631 0.43309 0.85970 1.39461 1.47910 1.55641 1.73107 2.12728 2.21194 2.63856 3.59025 3.73630 4.11484 4.22854 4.36546 4.42281 4.48996 4.71017 4.83514 4.92528 5.01538 5.02982 5.09461 5.24033 5.33266 5.40805 5.55207 5.77305 5.85368 5.97907 6.10477 6.42686 6.58073 6.86417 6.91441 8.29393 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.076398 B = 0.006578 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.413268 B = 4255.391527 C = 4479.591609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C 0.024 3.976 4 C -0.244 4.244 5 C -0.106 4.106 6 C -0.236 4.236 7 C 0.077 3.923 8 C -0.495 4.495 9 H 0.078 0.922 10 C 0.036 3.964 11 N -0.826 5.826 12 Si 0.987 3.013 13 H -0.262 1.262 14 H -0.263 1.263 15 H -0.259 1.259 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.082 4.082 19 O -0.214 6.214 20 H 0.055 0.945 21 H 0.044 0.956 22 H 0.094 0.906 23 H 0.116 0.884 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.099 0.901 27 H 0.292 0.708 28 H 0.125 0.875 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.112 -7.483 0.611 9.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.024 4.024 4 C -0.264 4.264 5 C -0.107 4.107 6 C -0.256 4.256 7 C 0.075 3.925 8 C -0.524 4.524 9 H 0.097 0.903 10 C -0.179 4.179 11 N -0.452 5.452 12 Si 0.807 3.193 13 H -0.187 1.187 14 H -0.187 1.187 15 H -0.183 1.183 16 C -0.155 4.155 17 C -0.117 4.117 18 C -0.127 4.127 19 O -0.118 6.118 20 H 0.074 0.926 21 H 0.063 0.937 22 H 0.113 0.887 23 H 0.135 0.865 24 H 0.110 0.890 25 H 0.184 0.816 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.143 0.857 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.962 -7.496 0.157 8.991 hybrid contribution 0.411 1.001 0.287 1.120 sum -4.552 -6.495 0.444 7.943 Atomic orbital electron populations 1.21774 0.92893 1.03627 1.01930 1.20371 0.97149 0.84692 1.05579 1.23032 0.99967 0.95950 0.83434 1.22394 1.11094 0.92916 0.99956 1.20045 1.01890 0.95477 0.93279 1.20461 1.14748 0.92464 0.97925 1.17869 0.89954 0.92551 0.92172 1.19761 1.26569 1.03522 1.02584 0.90348 1.26800 0.92384 1.04781 0.93888 1.69859 1.18994 1.38429 1.17908 0.85125 0.79650 0.75476 0.79052 1.18701 1.18694 1.18264 1.20995 1.02293 0.96889 0.95299 1.19554 1.03089 0.90443 0.98642 1.19547 1.12653 0.86471 0.94072 1.83708 1.70999 1.22308 1.34802 0.92588 0.93670 0.88700 0.86547 0.89049 0.81627 0.88234 0.89725 0.85709 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.90 71.98 0.71 -2.17 15 2 C -0.04 -0.95 6.44 29.85 0.19 -0.76 15 3 C 0.02 0.88 6.48 24.70 0.16 1.04 15 4 C -0.24 -9.87 11.01 23.56 0.26 -9.61 15 5 C -0.11 -5.35 6.38 -20.22 -0.13 -5.48 15 6 C -0.24 -12.72 9.86 22.95 0.23 -12.49 15 7 C 0.08 4.34 5.57 -21.28 -0.12 4.22 15 8 C -0.50 -27.16 9.04 23.43 0.21 -26.95 15 9 H 0.08 4.15 7.91 -2.91 -0.02 4.12 15 10 C 0.04 1.83 5.13 85.23 0.44 2.27 15 11 N -0.83 -42.88 10.98 21.81 0.24 -42.64 15 12 Si 0.99 37.81 29.60 68.60 2.03 39.84 15 13 H -0.26 -9.67 7.11 99.48 0.71 -8.97 15 14 H -0.26 -9.47 7.11 99.48 0.71 -8.77 15 15 H -0.26 -9.78 7.11 99.48 0.71 -9.08 15 16 C -0.14 -7.37 8.61 22.47 0.19 -7.17 15 17 C -0.10 -4.97 9.99 22.07 0.22 -4.75 15 18 C -0.08 -4.13 7.43 23.21 0.17 -3.96 15 19 O -0.21 -9.54 10.57 -8.61 -0.09 -9.63 15 20 H 0.05 1.16 8.14 -2.39 -0.02 1.14 15 21 H 0.04 1.02 8.14 -2.39 -0.02 1.00 15 22 H 0.09 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.12 2.08 8.14 -2.39 -0.02 2.06 15 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.17 5.53 8.06 -2.91 -0.02 5.51 15 26 H 0.10 5.10 8.06 -2.91 -0.02 5.07 15 27 H 0.29 13.54 8.30 -92.71 -0.77 12.77 15 28 H 0.13 6.79 6.16 -2.91 -0.02 6.77 15 29 H 0.12 5.38 8.06 -2.91 -0.02 5.35 15 Total: -1.00 -63.98 255.53 5.86 -58.12 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 1.14 Total: 20.10 kcal Atomic # 6 Polarization: -68.33 SS G_CDS: 2.54 Total: -65.79 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.24 Total: -42.64 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.09 Total: -9.63 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -63.98 5.86 -58.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178053.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.898 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds