Wall clock time and date at job start Mon Mar 30 2020 03:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31463 * 1 3 3 Si 1.86799 * 119.99833 * 2 1 4 4 H 1.48494 * 109.47176 * 267.30449 * 3 2 1 5 5 H 1.48504 * 109.47154 * 27.30801 * 3 2 1 6 6 H 1.48508 * 109.46987 * 147.30567 * 3 2 1 7 7 C 1.38935 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99871 * 342.46064 * 7 2 1 9 9 N 1.36885 * 120.00136 * 162.47178 * 7 2 1 10 10 C 1.47250 * 125.83926 * 334.88878 * 9 7 2 11 11 C 1.54156 * 103.29984 * 180.02562 * 10 9 7 12 12 N 1.46929 * 104.07570 * 359.77069 * 11 10 9 13 13 C 1.29301 * 110.13425 * 0.40052 * 12 11 10 14 14 C 1.48038 * 122.91695 * 179.83487 * 13 12 11 15 15 C 1.39485 * 120.13901 * 151.46006 * 14 13 12 16 16 C 1.37976 * 119.86380 * 179.97438 * 15 14 13 17 17 C 1.38345 * 120.13844 * 359.97438 * 16 15 14 18 18 C 1.38342 * 120.26960 * 0.02562 * 17 16 15 19 19 C 1.37980 * 120.13966 * 0.02562 * 18 17 16 20 20 H 0.97000 * 119.99916 * 359.97438 * 1 2 3 21 21 H 1.09005 * 110.64943 * 298.47252 * 10 9 7 22 22 H 1.08999 * 110.65773 * 61.56775 * 10 9 7 23 23 H 1.08993 * 110.51299 * 118.64381 * 11 10 9 24 24 H 1.09005 * 110.50583 * 241.21387 * 11 10 9 25 25 H 1.08004 * 120.06637 * 359.96109 * 15 14 13 26 26 H 1.08001 * 119.93229 * 180.02562 * 16 15 14 27 27 H 1.08004 * 119.86639 * 179.74223 * 17 16 15 28 28 H 1.08004 * 119.93231 * 179.97438 * 18 17 16 29 29 H 1.08000 * 120.06917 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 2.5531 2.0135 -1.3985 5 1 1.4187 2.6685 0.6423 6 1 3.5165 1.4573 0.7563 7 6 2.0093 -1.2032 -0.0005 8 1 1.5069 -2.1169 0.2809 9 7 3.3305 -1.2306 -0.3576 10 6 4.0088 -0.2555 -1.2278 11 6 5.4590 -0.7756 -1.2803 12 7 5.4388 -1.9764 -0.4338 13 6 4.2492 -2.1714 0.0337 14 6 3.9092 -3.3078 0.9196 15 6 2.8731 -3.1882 1.8457 16 6 2.5607 -4.2511 2.6682 17 6 3.2724 -5.4338 2.5753 18 6 4.3011 -5.5585 1.6587 19 6 4.6237 -4.5025 0.8314 20 1 -0.4850 0.8400 0.0004 21 1 3.5646 -0.2544 -2.2233 22 1 3.9735 0.7415 -0.7888 23 1 5.7368 -1.0299 -2.3031 24 1 6.1457 -0.0339 -0.8722 25 1 2.3167 -2.2654 1.9190 26 1 1.7584 -4.1599 3.3854 27 1 3.0269 -6.2616 3.2241 28 1 4.8534 -6.4842 1.5911 29 1 5.4273 -4.6009 0.1166 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260191988.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:29 Heat of formation + Delta-G solvation = 76.451608 kcal Electronic energy + Delta-G solvation = -14074.731584 eV Core-core repulsion = 11770.753622 eV Total energy + Delta-G solvation = -2303.977962 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.50498 -37.93534 -33.44419 -31.47056 -31.07401 -30.22549 -27.98871 -24.80080 -22.48192 -22.36555 -21.28156 -18.73275 -17.76920 -16.11089 -15.71966 -15.24865 -14.49707 -14.32744 -13.65643 -13.23489 -12.82289 -12.46300 -12.40743 -12.23694 -12.02158 -11.54801 -11.08663 -10.82883 -10.78889 -10.52021 -10.16835 -9.68214 -9.05834 -8.77972 -8.39641 -8.20675 -7.18941 -6.52553 -3.94395 1.59593 1.94918 3.01791 3.16038 3.18698 3.51061 4.06103 4.35241 4.47571 4.94937 5.18912 5.38933 5.48343 5.52157 5.62752 5.78850 6.02735 6.04348 6.11037 6.22486 6.37642 6.55637 6.59524 6.75573 6.96291 7.02925 7.13301 7.25156 7.50993 7.89901 8.15974 8.82740 9.23685 9.52698 10.58341 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.031464 B = 0.011839 C = 0.009091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.685216 B = 2364.590329 C = 3079.301627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.313 4.313 8 H 0.118 0.882 9 N -0.478 5.478 10 C 0.052 3.948 11 C 0.039 3.961 12 N -0.633 5.633 13 C 0.381 3.619 14 C -0.022 4.022 15 C -0.086 4.086 16 C -0.132 4.132 17 C -0.119 4.119 18 C -0.139 4.139 19 C -0.080 4.080 20 H 0.276 0.724 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.153 0.847 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -4.870 2.498 7.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.151 4.151 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.441 4.441 8 H 0.135 0.865 9 N -0.186 5.186 10 C -0.072 4.072 11 C -0.091 4.091 12 N -0.373 5.373 13 C 0.111 3.889 14 C -0.024 4.024 15 C -0.105 4.105 16 C -0.150 4.150 17 C -0.138 4.138 18 C -0.157 4.157 19 C -0.100 4.100 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.171 0.829 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.545 -4.982 2.445 7.845 hybrid contribution -0.458 1.617 -0.299 1.707 sum 5.087 -3.365 2.146 6.466 Atomic orbital electron populations 1.69722 1.05885 1.28195 1.46385 1.25181 0.95264 0.98350 0.96303 0.86820 0.79278 0.83170 0.78671 1.20211 1.21741 1.19398 1.19112 0.82157 0.96604 1.46201 0.86479 1.44001 1.08215 1.23476 1.42865 1.22889 0.95019 0.93849 0.95437 1.22738 0.93787 0.94127 0.98473 1.74405 1.17515 1.20425 1.24939 1.21126 0.86052 0.89969 0.91757 1.18116 0.96704 0.91721 0.95816 1.21976 0.95304 1.00313 0.92944 1.21074 1.00355 0.93522 1.00061 1.21154 0.96370 0.97598 0.98696 1.20960 0.98729 0.98601 0.97378 1.21205 0.98535 0.91761 0.98515 0.91357 0.91359 0.92614 0.91535 0.91769 0.82933 0.86193 0.86716 0.86434 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.94 13.96 55.50 0.77 -23.16 15 2 C 0.06 1.48 5.47 -17.45 -0.10 1.39 15 3 Si 0.89 20.93 24.39 -169.99 -4.15 16.78 15 4 H -0.28 -6.25 7.06 56.52 0.40 -5.85 15 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.27 -6.39 6.68 56.52 0.38 -6.01 15 7 C -0.31 -8.24 8.28 -15.04 -0.12 -8.37 15 8 H 0.12 3.20 6.22 -52.49 -0.33 2.87 15 9 N -0.48 -11.84 2.90 -112.15 -0.33 -12.16 15 10 C 0.05 1.18 5.85 -3.03 -0.02 1.16 15 11 C 0.04 0.81 8.04 -3.20 -0.03 0.79 15 12 N -0.63 -14.43 11.31 -57.94 -0.66 -15.09 15 13 C 0.38 8.92 7.32 -155.65 -1.14 7.79 15 14 C -0.02 -0.46 5.76 -104.95 -0.60 -1.06 15 15 C -0.09 -1.71 8.23 -39.21 -0.32 -2.04 15 16 C -0.13 -2.18 10.03 -39.64 -0.40 -2.57 15 17 C -0.12 -1.75 10.04 -39.50 -0.40 -2.15 15 18 C -0.14 -2.10 10.03 -39.64 -0.40 -2.49 15 19 C -0.08 -1.45 9.64 -39.21 -0.38 -1.83 15 20 H 0.28 7.15 8.31 -40.82 -0.34 6.81 15 21 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 22 H 0.06 1.27 3.30 -51.93 -0.17 1.10 15 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 25 H 0.15 3.34 5.59 -52.48 -0.29 3.05 15 26 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 27 H 0.11 1.32 8.06 -52.48 -0.42 0.90 15 28 H 0.12 1.42 8.06 -52.48 -0.42 0.99 15 29 H 0.13 2.22 7.96 -52.49 -0.42 1.81 15 LS Contribution 242.07 15.07 3.65 3.65 Total: -1.00 -28.58 242.07 -7.51 -36.09 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -2.91 Total: 3.28 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.90 Total: -9.39 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.21 Total: -50.41 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.15 Total: 16.78 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.58 -7.51 -36.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191988.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.545 kcal (2) G-P(sol) polarization free energy of solvation -28.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds