Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46802 * 2 1 4 4 O 1.42903 * 109.47201 * 120.00089 * 2 1 3 5 5 C 1.42897 * 113.99596 * 123.50539 * 4 2 1 6 6 C 1.50694 * 108.83386 * 56.04830 * 5 4 2 7 7 H 1.08005 * 120.00000 * 243.20988 * 6 5 4 8 8 C 1.37875 * 120.00140 * 62.92407 * 6 5 4 9 9 N 1.31518 * 120.00176 * 179.40644 * 8 6 5 10 10 Si 1.86796 * 119.99903 * 359.41418 * 8 6 5 11 11 H 1.48493 * 109.47595 * 84.86809 * 10 8 6 12 12 H 1.48500 * 109.47222 * 204.86926 * 10 8 6 13 13 H 1.48503 * 109.46925 * 324.86593 * 10 8 6 14 14 C 1.52338 * 108.87000 * 297.51338 * 5 4 2 15 15 C 1.54256 * 112.58749 * 239.32834 * 14 5 4 16 16 S 1.83954 * 102.58226 * 24.53095 * 15 14 5 17 17 C 1.54265 * 108.86529 * 174.57873 * 5 4 2 18 18 H 1.09001 * 109.46970 * 299.99822 * 1 2 3 19 19 H 1.08991 * 109.47399 * 59.99828 * 1 2 3 20 20 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46970 * 240.00178 * 2 1 3 22 22 H 1.08991 * 109.47240 * 53.20461 * 3 2 1 23 23 H 1.09001 * 109.46420 * 173.20183 * 3 2 1 24 24 H 1.08994 * 109.47306 * 293.19826 * 3 2 1 25 25 H 0.96993 * 120.00146 * 179.97438 * 9 8 6 26 26 H 1.08999 * 108.86576 * 0.14876 * 14 5 4 27 27 H 1.08998 * 108.86593 * 118.50842 * 14 5 4 28 28 H 1.09007 * 110.78678 * 142.79910 * 15 14 5 29 29 H 1.09000 * 110.78932 * 266.25595 * 15 14 5 30 30 H 1.09002 * 110.78700 * 214.41860 * 17 5 4 31 31 H 1.08997 * 110.78264 * 337.86635 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.8795 -1.7702 0.8889 6 6 4.0329 -1.2745 0.0553 7 1 4.1774 -1.6530 -0.9460 8 6 4.9002 -0.3336 0.5684 9 7 5.9136 0.0903 -0.1548 10 14 4.6362 0.3388 2.2910 11 1 5.2625 -0.5743 3.2804 12 1 5.2558 1.6842 2.3976 13 1 3.1801 0.4414 2.5645 14 6 2.1137 -2.8210 0.0952 15 6 2.0658 -4.1862 0.8117 16 16 2.2907 -3.7205 2.5770 17 6 3.4277 -2.3213 2.2214 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.5808 1.9902 0.8229 23 1 3.1232 1.4449 0.1217 24 1 1.7794 1.9200 -0.9445 25 1 6.5235 0.7525 0.2061 26 1 1.0940 -2.4697 -0.0624 27 1 2.5934 -2.9487 -0.8751 28 1 1.1008 -4.6696 0.6591 29 1 2.8791 -4.8288 0.4745 30 1 4.4517 -2.6753 2.1016 31 1 3.3674 -1.5671 3.0060 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = -45.166293 kcal Electronic energy + Delta-G solvation = -13878.573606 eV Core-core repulsion = 11672.473097 eV Total energy + Delta-G solvation = -2206.100509 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.37050 -34.15435 -32.34749 -31.25197 -28.76367 -26.55700 -25.65865 -23.36352 -20.66326 -19.06865 -17.14143 -16.29785 -15.36115 -14.60061 -14.12121 -14.05365 -13.41331 -13.07668 -12.80760 -12.56992 -12.05366 -11.74502 -11.64191 -11.59182 -11.24422 -10.83731 -10.61095 -10.52791 -10.21802 -9.99137 -9.77664 -9.42869 -8.88292 -8.73510 -8.12172 -7.13097 -6.27726 -4.37831 2.53892 2.92665 3.25107 3.40099 3.57329 4.34703 4.67656 5.07305 5.41205 5.47712 5.68799 5.76747 5.85922 5.95947 6.00513 6.08824 6.21368 6.27995 6.34961 6.41549 6.43941 6.60298 6.73411 6.85747 7.08823 7.13113 7.41971 8.09659 8.56214 8.72617 9.35171 10.82040 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.017755 C = 0.013325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.633307 B = 1576.664733 C = 2100.843408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 C -0.158 4.158 4 O -0.382 6.382 5 C 0.205 3.795 6 C -0.547 4.547 7 H 0.079 0.921 8 C 0.094 3.906 9 N -0.882 5.882 10 Si 0.853 3.147 11 H -0.283 1.283 12 H -0.297 1.297 13 H -0.219 1.219 14 C -0.136 4.136 15 C -0.053 4.053 16 S -0.344 6.344 17 C -0.042 4.042 18 H 0.052 0.948 19 H 0.054 0.946 20 H 0.051 0.949 21 H 0.071 0.929 22 H 0.043 0.957 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.267 0.733 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.478 -2.282 0.566 7.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 C -0.215 4.215 4 O -0.303 6.303 5 C 0.165 3.835 6 C -0.585 4.585 7 H 0.097 0.903 8 C -0.112 4.112 9 N -0.518 5.518 10 Si 0.681 3.319 11 H -0.210 1.210 12 H -0.224 1.224 13 H -0.142 1.142 14 C -0.175 4.175 15 C -0.201 4.201 16 S -0.118 6.118 17 C -0.189 4.189 18 H 0.072 0.928 19 H 0.073 0.927 20 H 0.070 0.930 21 H 0.089 0.911 22 H 0.062 0.938 23 H 0.089 0.911 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.848 -2.591 1.792 8.456 hybrid contribution 0.677 0.837 -0.387 1.145 sum -7.170 -1.754 1.404 7.514 Atomic orbital electron populations 1.22173 0.97076 1.01291 1.01036 1.21534 0.91106 0.92813 0.90649 1.22119 1.03009 0.96510 0.99891 1.87977 1.65402 1.45977 1.30916 1.19880 0.88762 0.85043 0.89838 1.21387 1.10013 1.25172 1.01976 0.90287 1.24928 0.93771 0.94954 0.97513 1.69909 1.14443 1.29932 1.37540 0.87526 0.81767 0.77944 0.84700 1.20987 1.22415 1.14192 1.22681 1.01326 0.92844 1.00608 1.23993 1.04036 1.00318 0.91787 1.87454 1.65106 1.44323 1.14926 1.24743 0.99093 0.94833 1.00252 0.92841 0.92740 0.92978 0.91067 0.93775 0.91111 0.93229 0.92290 0.91244 0.90409 0.89045 0.89813 0.88068 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.47 37.16 0.35 -2.21 16 2 C 0.10 1.93 1.97 -26.73 -0.05 1.88 16 3 C -0.16 -3.11 9.24 37.16 0.34 -2.76 16 4 O -0.38 -8.57 6.63 -35.23 -0.23 -8.81 16 5 C 0.20 4.57 0.59 -91.45 -0.05 4.51 16 6 C -0.55 -14.03 6.97 -34.44 -0.24 -14.27 16 7 H 0.08 2.19 7.44 -52.48 -0.39 1.80 16 8 C 0.09 2.53 4.38 -17.82 -0.08 2.45 16 9 N -0.88 -25.30 13.96 55.43 0.77 -24.52 16 10 Si 0.85 20.88 21.66 -169.99 -3.68 17.20 16 11 H -0.28 -6.84 7.07 56.52 0.40 -6.44 16 12 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16 13 H -0.22 -5.28 5.38 56.52 0.30 -4.97 16 14 C -0.14 -2.59 4.89 -26.41 -0.13 -2.72 16 15 C -0.05 -0.91 7.46 37.81 0.28 -0.63 16 16 S -0.34 -6.80 23.26 -107.50 -2.50 -9.30 16 17 C -0.04 -0.93 4.66 37.82 0.18 -0.75 16 18 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 19 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 20 H 0.05 0.81 7.01 -51.93 -0.36 0.45 16 21 H 0.07 1.48 6.31 -51.93 -0.33 1.15 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.07 1.61 5.22 -51.93 -0.27 1.33 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.07 1.26 5.89 -51.93 -0.31 0.95 16 27 H 0.08 1.49 7.14 -51.93 -0.37 1.12 16 28 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.10 2.30 7.69 -51.93 -0.40 1.90 16 31 H 0.09 2.17 5.12 -51.93 -0.27 1.91 16 LS Contribution 243.69 15.07 3.67 3.67 Total: -1.00 -27.84 243.69 -5.84 -33.68 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.47 Total: 2.59 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 0.60 Total: -14.51 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.77 Total: -24.52 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.23 Total: -8.81 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -3.68 Total: 17.20 kcal Atomic # 16 Polarization: -6.80 SS G_CDS: -2.50 Total: -9.30 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.84 -5.84 -33.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.485 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds