Wall clock time and date at job start Mon Mar 30 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 113.99714 * 2 1 4 4 C 1.53000 * 109.46804 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47398 * 305.00087 * 4 3 2 6 6 C 1.50703 * 109.46912 * 185.00010 * 4 3 2 7 7 H 1.08003 * 119.99742 * 240.00283 * 6 4 3 8 8 C 1.37873 * 119.99873 * 60.00145 * 6 4 3 9 9 N 1.31509 * 120.00433 * 359.97438 * 8 6 4 10 10 Si 1.86803 * 119.99975 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47061 * 59.99778 * 10 8 6 12 12 H 1.48494 * 109.47452 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46988 * 300.00348 * 10 8 6 14 14 C 1.53002 * 109.47233 * 65.00261 * 4 3 2 15 15 H 1.09004 * 108.84822 * 62.86908 * 14 4 3 16 16 C 1.52947 * 108.88358 * 304.43230 * 14 4 3 17 17 C 1.55153 * 108.95981 * 209.10263 * 16 14 4 18 18 S 1.83991 * 100.90703 * 41.43893 * 17 16 14 19 19 C 1.53703 * 108.89089 * 181.45333 * 14 4 3 20 20 H 1.08998 * 109.47125 * 60.00136 * 1 2 3 21 21 H 1.09000 * 109.46649 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47033 * 299.99754 * 1 2 3 23 23 H 1.09002 * 109.47048 * 60.00005 * 3 2 1 24 24 H 1.08991 * 109.47029 * 300.00064 * 3 2 1 25 25 H 0.97001 * 120.00323 * 179.97438 * 9 8 6 26 26 H 1.08997 * 109.60306 * 329.03541 * 16 14 4 27 27 H 1.09003 * 109.59861 * 89.17564 * 16 14 4 28 28 H 1.09000 * 111.13483 * 283.53326 * 17 16 14 29 29 H 1.08997 * 111.16652 * 159.36705 * 17 16 14 30 30 H 1.09004 * 110.33763 * 242.49645 * 19 14 4 31 31 H 1.09007 * 110.34098 * 4.63499 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 6 4.1479 2.5561 0.1245 7 1 4.8005 2.9281 -0.6515 8 6 3.8751 3.3358 1.2284 9 7 3.0800 2.8830 2.1730 10 14 4.6348 5.0354 1.3822 11 1 4.2057 5.8751 0.2349 12 1 4.1880 5.6643 2.6510 13 1 6.1151 4.9176 1.3831 14 6 3.9963 0.5365 -1.3064 15 1 3.7209 1.1857 -2.1377 16 6 3.2817 -0.8055 -1.4723 17 6 4.1900 -1.7628 -2.2883 18 16 5.8342 -1.3990 -1.5470 19 6 5.5259 0.3884 -1.2762 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8464 0.8900 24 1 1.6886 1.8464 -0.8899 25 1 2.8883 3.4314 2.9498 26 1 3.0828 -1.2376 -0.4916 27 1 2.3402 -0.6556 -2.0007 28 1 4.1730 -1.5118 -3.3489 29 1 3.9086 -2.8037 -2.1288 30 1 5.9793 0.9764 -2.0743 31 1 5.9176 0.6997 -0.3078 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260231469.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:28 Heat of formation + Delta-G solvation = -62.914973 kcal Electronic energy + Delta-G solvation = -13323.720513 eV Core-core repulsion = 11116.850363 eV Total energy + Delta-G solvation = -2206.870150 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.74728 -35.54074 -33.03236 -30.16560 -28.13112 -26.01311 -24.59453 -23.54913 -20.98844 -18.94544 -16.70452 -15.80558 -15.35321 -15.04908 -14.67155 -14.35244 -13.87131 -13.20275 -12.90790 -12.31346 -11.90266 -11.69714 -11.40644 -11.11252 -11.10093 -10.81782 -10.73525 -10.58521 -9.98599 -9.72341 -9.40020 -9.20076 -9.02720 -8.73840 -8.28504 -7.16880 -6.12400 -4.21215 2.49766 2.97200 3.24879 3.30432 3.32576 4.32137 4.80362 5.23689 5.36580 5.43312 5.70692 5.75059 5.87827 5.91887 6.03381 6.12304 6.15878 6.36694 6.50765 6.61890 6.80006 6.87767 6.97762 7.20077 7.50115 7.70001 7.88561 8.11304 8.40669 8.83376 9.44821 10.92289 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.011897 C = 0.008565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.023984 B = 2353.027070 C = 3268.381095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.397 6.397 3 C 0.059 3.941 4 C 0.065 3.935 5 H 0.040 0.960 6 C -0.518 4.518 7 H 0.061 0.939 8 C 0.063 3.937 9 N -0.886 5.886 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.275 1.275 14 C -0.086 4.086 15 H 0.060 0.940 16 C -0.104 4.104 17 C -0.066 4.066 18 S -0.347 6.347 19 C -0.035 4.035 20 H 0.026 0.974 21 H 0.068 0.932 22 H 0.032 0.968 23 H 0.084 0.916 24 H 0.017 0.983 25 H 0.264 0.736 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -4.509 -5.850 7.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.317 6.317 3 C -0.017 4.017 4 C 0.046 3.954 5 H 0.058 0.942 6 C -0.556 4.556 7 H 0.079 0.921 8 C -0.139 4.139 9 N -0.524 5.524 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.200 1.200 14 C -0.106 4.106 15 H 0.078 0.922 16 C -0.143 4.143 17 C -0.214 4.214 18 S -0.122 6.122 19 C -0.183 4.183 20 H 0.044 0.956 21 H 0.086 0.914 22 H 0.050 0.950 23 H 0.102 0.898 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.080 -5.313 -5.441 7.681 hybrid contribution -0.867 2.015 -0.135 2.197 sum -1.947 -3.298 -5.577 6.765 Atomic orbital electron populations 1.22518 0.84240 1.00657 0.98967 1.87948 1.17118 1.31348 1.95289 1.23085 0.96374 0.81899 1.00315 1.18830 0.89507 0.95722 0.91339 0.94181 1.21098 1.28753 1.00268 1.05514 0.92062 1.25023 0.94946 0.98361 0.95559 1.69859 1.35756 1.37354 1.09434 0.86635 0.79831 0.84102 0.77376 1.20219 1.21234 1.20046 1.21696 0.91226 0.96077 1.01570 0.92164 1.22519 0.97260 0.93660 1.00846 1.24390 0.92866 1.02961 1.01149 1.87450 1.26195 1.16416 1.82128 1.24040 0.99290 0.89369 1.05563 0.95574 0.91366 0.94976 0.89794 0.96473 0.92646 0.89293 0.90964 0.90418 0.88850 0.90718 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.67 16 2 O -0.40 -8.20 6.95 -35.23 -0.24 -8.45 16 3 C 0.06 1.36 5.07 37.16 0.19 1.55 16 4 C 0.07 1.55 1.40 -91.77 -0.13 1.42 16 5 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 6 C -0.52 -13.30 7.65 -34.44 -0.26 -13.56 16 7 H 0.06 1.53 7.48 -52.48 -0.39 1.14 16 8 C 0.06 1.67 5.29 -17.82 -0.09 1.57 16 9 N -0.89 -24.32 11.29 55.43 0.63 -23.69 16 10 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 14 C -0.09 -1.73 2.25 -90.28 -0.20 -1.93 16 15 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.10 -1.88 4.12 -25.62 -0.11 -1.98 16 17 C -0.07 -1.04 7.52 38.30 0.29 -0.75 16 18 S -0.35 -6.38 23.23 -107.50 -2.50 -8.88 16 19 C -0.03 -0.68 6.31 37.52 0.24 -0.44 16 20 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.08 2.18 5.95 -51.93 -0.31 1.87 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.09 1.78 6.58 -51.93 -0.34 1.43 16 27 H 0.07 1.25 7.48 -51.93 -0.39 0.86 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.11 2.31 7.21 -51.93 -0.37 1.93 16 LS Contribution 259.24 15.07 3.91 3.91 Total: -1.00 -26.70 259.24 -6.94 -33.65 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.75 Total: 0.51 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 1.03 Total: -12.45 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.63 Total: -23.69 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.24 Total: -8.45 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -6.38 SS G_CDS: -2.50 Total: -8.88 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.70 -6.94 -33.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260231469.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.268 kcal (2) G-P(sol) polarization free energy of solvation -26.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds