Wall clock time and date at job start Mon Mar 30 2020 02:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99788 * 2 1 4 4 C 1.52998 * 109.46883 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47178 * 55.00147 * 4 3 2 6 6 C 1.50704 * 109.47171 * 295.00172 * 4 3 2 7 7 H 1.08001 * 120.00139 * 120.00265 * 6 4 3 8 8 C 1.37873 * 119.99935 * 299.99874 * 6 4 3 9 9 N 1.31513 * 120.00151 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 119.99986 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46783 * 90.00036 * 10 8 6 12 12 H 1.48494 * 109.47213 * 209.99827 * 10 8 6 13 13 H 1.48498 * 109.46848 * 330.00491 * 10 8 6 14 14 C 1.53002 * 109.47140 * 175.00284 * 4 3 2 15 15 H 1.08999 * 109.96352 * 59.79457 * 14 4 3 16 16 C 1.54015 * 109.97813 * 180.97585 * 14 4 3 17 17 C 1.54276 * 108.84323 * 166.51454 * 16 14 4 18 18 S 1.83098 * 104.75016 * 332.19840 * 17 16 14 19 19 C 1.55132 * 109.97388 * 298.54652 * 14 4 3 20 20 H 1.08998 * 109.46597 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47035 * 299.99778 * 1 2 3 22 22 H 1.09000 * 109.46675 * 59.99812 * 1 2 3 23 23 H 1.09004 * 109.47165 * 60.00340 * 3 2 1 24 24 H 1.08992 * 109.47034 * 300.00166 * 3 2 1 25 25 H 0.97005 * 119.99758 * 179.97438 * 9 8 6 26 26 H 1.09005 * 109.57728 * 46.66854 * 16 14 4 27 27 H 1.09009 * 109.72911 * 286.45546 * 16 14 4 28 28 H 1.09002 * 110.40402 * 213.34657 * 17 16 14 29 29 H 1.08998 * 110.39950 * 91.04553 * 17 16 14 30 30 H 1.09004 * 110.85654 * 80.34179 * 19 14 4 31 31 H 1.09004 * 111.03570 * 316.77839 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8515 0.5682 -0.8410 6 6 3.9883 0.5466 1.2886 7 1 4.5376 -0.3830 1.2669 8 6 3.7015 1.1497 2.4948 9 7 3.0323 2.2815 2.5215 10 14 4.2622 0.3584 4.0914 11 1 5.6143 0.8608 4.4447 12 1 3.3077 0.7017 5.1759 13 1 4.3105 -1.1162 3.9227 14 6 4.1574 2.5769 -0.1250 15 1 3.8435 3.2016 0.7113 16 6 5.6934 2.4668 -0.1501 17 6 6.2822 3.8155 -0.6132 18 16 4.9824 4.5529 -1.6712 19 6 3.7280 3.2302 -1.4649 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.6887 1.8464 0.8900 24 1 1.6886 1.8464 -0.8899 25 1 2.8302 2.7056 3.3702 26 1 5.9919 1.6801 -0.8431 27 1 6.0618 2.2303 0.8482 28 1 7.1942 3.6547 -1.1881 29 1 6.4830 4.4570 0.2448 30 1 2.7266 3.6537 -1.3868 31 1 3.7814 2.5135 -2.2845 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260231470.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:30 Heat of formation + Delta-G solvation = -61.215734 kcal Electronic energy + Delta-G solvation = -13355.939276 eV Core-core repulsion = 11149.142811 eV Total energy + Delta-G solvation = -2206.796465 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.42911 -35.76689 -32.68963 -30.24248 -27.87480 -26.10104 -24.31935 -23.65013 -20.81967 -19.10571 -16.48067 -15.85516 -15.17886 -14.95079 -14.52604 -14.30279 -13.83109 -13.26291 -12.83334 -12.66535 -11.78301 -11.56231 -11.39675 -11.06408 -10.92828 -10.65340 -10.56859 -10.38631 -10.08131 -9.81867 -9.49861 -9.32060 -8.78390 -8.62700 -8.25683 -7.17046 -6.03617 -4.10415 2.50187 3.01010 3.26823 3.34787 3.39443 4.39584 4.88262 5.22127 5.50617 5.53521 5.77279 5.80884 5.93245 5.99025 6.06103 6.17806 6.21856 6.42782 6.48587 6.50573 6.83884 6.96390 7.10608 7.18646 7.52904 7.67322 7.95644 8.27806 8.45239 8.85734 9.54694 10.97435 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.012958 C = 0.009230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.432927 B = 2160.282651 C = 3032.929021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.061 3.939 5 H 0.025 0.975 6 C -0.493 4.493 7 H 0.056 0.944 8 C 0.065 3.935 9 N -0.893 5.893 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.274 1.274 14 C -0.081 4.081 15 H 0.119 0.881 16 C -0.105 4.105 17 C -0.063 4.063 18 S -0.346 6.346 19 C -0.057 4.057 20 H 0.069 0.931 21 H 0.032 0.968 22 H 0.024 0.976 23 H 0.085 0.915 24 H 0.003 0.997 25 H 0.261 0.739 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 1.053 -4.048 4.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.301 6.301 3 C -0.013 4.013 4 C 0.040 3.960 5 H 0.043 0.957 6 C -0.531 4.531 7 H 0.074 0.926 8 C -0.135 4.135 9 N -0.533 5.533 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.101 4.101 15 H 0.137 0.863 16 C -0.143 4.143 17 C -0.211 4.211 18 S -0.120 6.120 19 C -0.205 4.205 20 H 0.088 0.912 21 H 0.050 0.950 22 H 0.042 0.958 23 H 0.103 0.897 24 H 0.021 0.979 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.410 2.056 -4.547 5.007 hybrid contribution -0.003 -1.114 1.521 1.886 sum 0.407 0.943 -3.025 3.195 Atomic orbital electron populations 1.22523 0.84079 1.00805 0.98714 1.87886 1.16830 1.30222 1.95163 1.22895 0.96719 0.82704 0.98941 1.18618 0.89685 0.91181 0.96497 0.95681 1.20997 1.34536 1.07355 0.90204 0.92599 1.24887 0.94907 0.94847 0.98887 1.69697 1.40252 1.17442 1.25899 0.86620 0.78339 0.79916 0.83343 1.20779 1.21316 1.19932 1.22330 0.92816 1.00404 0.94542 0.86290 1.22159 0.96328 0.93268 1.02555 1.23985 0.97428 0.99945 0.99701 1.87059 1.19870 1.37940 1.67161 1.24546 0.97816 0.95774 1.02317 0.91245 0.94979 0.95771 0.89732 0.97870 0.92862 0.92301 0.89527 0.90009 0.89847 0.89214 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 11.01 101.05 1.11 1.77 16 2 O -0.38 -8.84 10.46 -35.23 -0.37 -9.21 16 3 C 0.06 1.47 5.03 37.16 0.19 1.66 16 4 C 0.06 1.43 1.89 -91.77 -0.17 1.25 16 5 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 6 C -0.49 -12.74 7.59 -34.44 -0.26 -13.00 16 7 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 8 C 0.07 1.68 5.14 -17.82 -0.09 1.59 16 9 N -0.89 -23.31 9.34 55.43 0.52 -22.79 16 10 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 C -0.08 -1.72 1.92 -88.96 -0.17 -1.89 16 15 H 0.12 2.89 6.12 -51.93 -0.32 2.58 16 16 C -0.10 -2.03 5.25 -25.53 -0.13 -2.17 16 17 C -0.06 -1.07 7.33 37.83 0.28 -0.80 16 18 S -0.35 -6.41 23.26 -107.50 -2.50 -8.91 16 19 C -0.06 -1.08 5.78 38.29 0.22 -0.86 16 20 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 21 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.08 2.15 5.95 -51.93 -0.31 1.84 16 24 H 0.00 0.07 6.79 -51.93 -0.35 -0.28 16 25 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 26 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 27 H 0.09 1.79 7.81 -51.92 -0.41 1.38 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.09 1.68 7.61 -51.93 -0.40 1.29 16 31 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 LS Contribution 260.32 15.07 3.92 3.92 Total: -1.00 -26.49 260.32 -7.18 -33.68 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.70 Total: 0.20 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 0.97 Total: -12.45 kcal Atomic # 7 Polarization: -23.31 SS G_CDS: 0.52 Total: -22.79 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.37 Total: -9.21 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -6.41 SS G_CDS: -2.50 Total: -8.91 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.49 -7.18 -33.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260231470.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.537 kcal (2) G-P(sol) polarization free energy of solvation -26.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds