Wall clock time and date at job start Mon Mar 30 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99668 * 2 1 4 4 H 1.48506 * 109.47324 * 239.99786 * 3 2 1 5 5 H 1.48498 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47137 * 119.99827 * 3 2 1 7 7 C 1.37873 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99785 * 359.97438 * 7 2 1 10 10 C 1.50709 * 109.46927 * 180.02562 * 9 7 2 11 11 C 1.35311 * 126.12584 * 85.02286 * 10 9 7 12 12 C 1.39876 * 107.91749 * 179.97438 * 11 10 9 13 13 N 1.30834 * 108.20073 * 0.27043 * 12 11 10 14 14 N 1.34947 * 126.12387 * 264.98715 * 10 9 7 15 15 C 1.46500 * 126.04040 * 0.03254 * 14 10 9 16 16 C 1.52992 * 109.47291 * 90.00121 * 15 14 10 17 17 F 1.39904 * 109.46849 * 65.00170 * 16 15 14 18 18 F 1.39895 * 109.47350 * 185.00160 * 16 15 14 19 19 H 0.96993 * 120.00137 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47195 * 60.00589 * 9 7 2 21 21 H 1.08995 * 109.47290 * 299.99902 * 9 7 2 22 22 H 1.07992 * 126.04231 * 359.94661 * 11 10 9 23 23 H 1.08002 * 125.89548 * 179.97438 * 12 11 10 24 24 H 1.08996 * 109.47009 * 210.00717 * 15 14 10 25 25 H 1.09011 * 109.46832 * 330.00309 * 15 14 10 26 26 H 1.09007 * 109.47130 * 305.00372 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2305 -3.6446 0.0027 11 6 2.8210 -4.1883 1.0920 12 6 3.6552 -5.2236 0.6576 13 7 3.5730 -5.2948 -0.6462 14 7 2.6751 -4.3121 -1.0825 15 6 2.2914 -4.0510 -2.4721 16 6 3.2504 -3.0270 -3.0822 17 9 4.5360 -3.5747 -3.1499 18 9 2.8177 -2.6922 -4.3698 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8881 21 1 0.6248 -2.5563 0.8919 22 1 2.6745 -3.8775 2.1158 23 1 4.2657 -5.8522 1.2890 24 1 2.3391 -4.9786 -3.0425 25 1 1.2747 -3.6588 -2.5007 26 1 3.2692 -2.1315 -2.4609 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260242670.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:14 Heat of formation + Delta-G solvation = -39.899519 kcal Electronic energy + Delta-G solvation = -14500.855287 eV Core-core repulsion = 11637.602432 eV Total energy + Delta-G solvation = -2863.252855 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.66558 -46.66703 -40.54273 -33.82930 -33.23579 -30.85945 -28.07263 -27.06726 -23.41990 -23.13681 -20.52678 -19.15086 -17.22140 -17.00988 -16.70666 -16.20418 -15.53827 -14.59928 -13.91524 -13.78326 -13.58842 -13.14515 -13.03974 -12.55208 -12.39721 -12.08419 -11.81067 -11.44061 -10.93908 -10.85450 -10.77385 -10.15826 -9.87609 -9.72076 -8.66599 -8.61734 -7.79520 -6.25292 -4.31984 2.48787 2.90310 3.21179 3.26661 3.29257 3.53478 4.07577 4.28999 4.59510 4.66309 5.03107 5.12313 5.36350 5.56818 5.64090 5.77810 6.15300 6.48922 6.66123 7.19401 7.26579 7.33400 7.63475 7.69238 8.04490 8.34219 8.72430 9.34413 10.84044 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.011822 C = 0.009266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.711762 B = 2367.950864 C = 3021.182393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.070 3.930 10 C 0.138 3.862 11 C -0.293 4.293 12 C 0.047 3.953 13 N -0.318 5.318 14 N -0.382 5.382 15 C 0.098 3.902 16 C 0.244 3.756 17 F -0.202 7.202 18 F -0.202 7.202 19 H 0.267 0.733 20 H 0.030 0.970 21 H 0.050 0.950 22 H 0.142 0.858 23 H 0.175 0.825 24 H 0.106 0.894 25 H 0.124 0.876 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -5.476 -2.691 6.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.031 3.969 10 C 0.013 3.987 11 C -0.322 4.322 12 C -0.139 4.139 13 N -0.138 5.138 14 N -0.165 5.165 15 C -0.026 4.026 16 C 0.190 3.810 17 F -0.183 7.183 18 F -0.184 7.184 19 H 0.076 0.924 20 H 0.048 0.952 21 H 0.068 0.932 22 H 0.160 0.840 23 H 0.192 0.808 24 H 0.124 0.876 25 H 0.142 0.858 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.422 -5.958 -3.902 7.901 hybrid contribution 0.267 1.352 0.679 1.536 sum 3.688 -4.606 -3.223 6.724 Atomic orbital electron populations 1.69919 1.06048 1.27486 1.49077 1.24979 0.94902 0.99359 0.94567 0.86569 0.79598 0.82490 0.78979 1.20046 1.20984 1.19893 1.20907 0.93064 0.89427 1.52923 0.92294 1.18119 0.91577 0.87795 0.99368 1.22217 0.96682 0.93985 0.85825 1.21146 1.07879 1.03656 0.99510 1.23737 0.99318 0.98575 0.92304 1.77255 1.12131 1.11380 1.13003 1.48112 1.35870 1.27630 1.04882 1.22371 0.99593 1.00291 0.80329 1.22492 0.78651 0.98515 0.81391 1.92987 1.40988 1.87758 1.96557 1.92961 1.89769 1.93504 1.42145 0.92376 0.95155 0.93228 0.84019 0.80790 0.87599 0.85763 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.24 13.29 55.43 0.74 -23.50 15 2 C 0.07 1.70 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.26 15 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.52 -13.43 9.09 -34.44 -0.31 -13.74 15 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 15 9 C 0.07 1.64 5.26 -29.03 -0.15 1.48 15 10 C 0.14 2.92 6.12 -82.26 -0.50 2.41 15 11 C -0.29 -5.72 10.72 -40.01 -0.43 -6.15 15 12 C 0.05 0.84 12.03 -17.36 -0.21 0.63 15 13 N -0.32 -6.24 12.58 30.63 0.39 -5.85 15 14 N -0.38 -7.47 3.60 -57.14 -0.21 -7.67 15 15 C 0.10 1.62 6.44 -4.05 -0.03 1.60 15 16 C 0.24 4.19 5.55 37.15 0.21 4.40 15 17 F -0.20 -3.75 17.32 2.25 0.04 -3.71 15 18 F -0.20 -3.36 17.34 2.25 0.04 -3.32 15 19 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 20 H 0.03 0.72 6.95 -51.93 -0.36 0.35 15 21 H 0.05 1.23 8.14 -51.93 -0.42 0.80 15 22 H 0.14 2.57 8.06 -52.49 -0.42 2.15 15 23 H 0.18 2.37 8.06 -52.49 -0.42 1.94 15 24 H 0.11 1.53 8.14 -51.93 -0.42 1.11 15 25 H 0.12 1.91 6.98 -51.92 -0.36 1.55 15 26 H 0.13 2.37 8.14 -51.93 -0.42 1.95 15 LS Contribution 246.14 15.07 3.71 3.71 Total: -1.00 -28.55 246.14 -4.22 -32.77 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -2.38 Total: 0.08 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.52 Total: -7.76 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.92 Total: -37.03 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.08 Total: -7.03 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.55 -4.22 -32.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260242670.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.128 kcal (2) G-P(sol) polarization free energy of solvation -28.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds