Wall clock time and date at job start Mon Mar 30 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35044 * 126.39660 * 2 1 4 4 C 1.50700 * 125.65068 * 359.77764 * 3 2 1 5 5 C 1.50697 * 109.47220 * 89.99523 * 4 3 2 6 6 H 1.07997 * 119.99784 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99979 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00354 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99917 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47285 * 60.00060 * 9 7 5 11 11 H 1.48504 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47166 * 300.00030 * 9 7 5 13 13 N 1.30498 * 108.69841 * 179.74090 * 3 2 1 14 14 C 1.34128 * 109.25660 * 0.02562 * 13 3 2 15 15 C 1.34669 * 108.02336 * 0.02562 * 14 13 3 16 16 C 1.50696 * 126.59505 * 180.02562 * 15 14 13 17 17 F 1.39905 * 109.47180 * 29.95367 * 16 15 14 18 18 F 1.39905 * 109.47432 * 149.95492 * 16 15 14 19 19 H 1.09006 * 109.47414 * 89.99470 * 1 2 3 20 20 H 1.09001 * 109.47268 * 209.99501 * 1 2 3 21 21 H 1.09001 * 109.46803 * 329.99456 * 1 2 3 22 22 H 1.08994 * 109.46985 * 210.00106 * 4 3 2 23 23 H 1.09003 * 109.46857 * 330.00086 * 4 3 2 24 24 H 0.97003 * 120.00510 * 180.02562 * 8 7 5 25 25 H 1.07999 * 125.98696 * 180.02562 * 14 13 3 26 26 H 1.09003 * 109.46904 * 269.95941 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 6 1.8018 2.5206 -0.0048 5 6 1.6425 3.0018 1.4144 6 1 1.8565 2.3361 2.2375 7 6 1.2243 4.2920 1.6621 8 7 0.9641 5.1028 0.6598 9 14 1.0275 4.8886 3.4213 10 1 2.3315 4.7927 4.1254 11 1 0.5708 6.3017 3.4166 12 1 0.0243 4.0460 4.1204 13 7 3.5095 0.6903 0.0056 14 6 3.5460 -0.6505 0.0088 15 6 2.2772 -1.1018 0.0044 16 6 1.8363 -2.5428 0.0063 17 9 2.7898 -3.3214 0.6712 18 9 0.6051 -2.6530 0.6616 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 2.5381 3.1394 -0.5177 23 1 0.8448 2.5907 -0.5217 24 1 0.6703 6.0107 0.8340 25 1 4.4368 -1.2611 0.0139 26 1 1.7338 -2.8928 -1.0209 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260247522.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:24 Heat of formation + Delta-G solvation = -69.077734 kcal Electronic energy + Delta-G solvation = -14345.563887 eV Core-core repulsion = 11481.045770 eV Total energy + Delta-G solvation = -2864.518117 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.05690 -48.09803 -43.05500 -35.53738 -34.93704 -32.84596 -30.15635 -27.82678 -26.64932 -24.92954 -21.99616 -20.85596 -18.71981 -18.56659 -18.30111 -17.99480 -16.86366 -16.45238 -16.39136 -15.22433 -14.79182 -14.53740 -14.50872 -14.34022 -13.99174 -13.59819 -13.53184 -13.20905 -12.83106 -12.62917 -12.37332 -11.95114 -11.65505 -10.96225 -10.65963 -10.60555 -9.36107 -8.26408 -6.39920 0.84276 1.39474 1.42178 1.50327 1.75069 2.10048 2.40732 2.79453 3.05582 3.16309 3.60907 3.78930 3.93521 4.03455 4.32534 4.36554 4.60016 4.68830 5.10187 5.20861 5.40930 5.63738 5.74297 5.96360 6.22832 6.66480 7.15545 7.28833 8.82752 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.044433 B = 0.007787 C = 0.007565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.012379 B = 3594.765756 C = 3700.517913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.441 5.441 3 C 0.251 3.749 4 C 0.105 3.895 5 C -0.533 4.533 6 H 0.044 0.956 7 C 0.018 3.982 8 N -0.920 5.920 9 Si 0.965 3.035 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.266 1.266 13 N -0.541 5.541 14 C 0.002 3.998 15 C -0.143 4.143 16 C 0.368 3.632 17 F -0.196 7.196 18 F -0.207 7.207 19 H 0.098 0.902 20 H 0.112 0.888 21 H 0.082 0.918 22 H 0.023 0.977 23 H 0.033 0.967 24 H 0.270 0.730 25 H 0.195 0.805 26 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 -14.268 -2.510 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.122 5.122 3 C -0.012 4.012 4 C 0.067 3.933 5 C -0.572 4.572 6 H 0.063 0.937 7 C -0.182 4.182 8 N -0.559 5.559 9 Si 0.789 3.211 10 H -0.201 1.201 11 H -0.200 1.200 12 H -0.191 1.191 13 N -0.259 5.259 14 C -0.148 4.148 15 C -0.257 4.257 16 C 0.314 3.686 17 F -0.177 7.177 18 F -0.188 7.188 19 H 0.117 0.883 20 H 0.130 0.870 21 H 0.101 0.899 22 H 0.041 0.959 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.212 0.788 26 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.236 -13.612 -2.534 14.025 hybrid contribution -0.590 0.171 0.938 1.121 sum -2.827 -13.441 -1.596 13.827 Atomic orbital electron populations 1.22508 0.74664 1.06104 1.05214 1.45222 1.08846 1.04922 1.53231 1.24101 0.85432 0.92141 0.99559 1.17541 0.96050 0.82138 0.97593 1.21047 1.46616 0.98003 0.91552 0.93743 1.25751 0.94372 0.96331 1.01715 1.70017 1.45643 1.07360 1.32835 0.85512 0.78695 0.77635 0.79283 1.20121 1.19968 1.19083 1.70329 1.20015 1.12562 1.23025 1.22568 0.96590 0.90835 1.04856 1.21990 0.92702 0.90726 1.20324 1.19876 0.71354 0.82922 0.94467 1.93003 1.65207 1.75384 1.84125 1.92906 1.44876 1.96316 1.84739 0.88313 0.87011 0.89904 0.95861 0.94845 0.92100 0.78824 0.80896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.66 10.53 127.77 1.34 3.00 15 2 N -0.44 -16.58 3.15 -523.04 -1.65 -18.23 15 3 C 0.25 11.71 7.09 138.13 0.98 12.69 15 4 C 0.11 5.57 5.07 29.10 0.15 5.72 15 5 C -0.53 -30.17 9.09 25.60 0.23 -29.94 15 6 H 0.04 2.57 7.74 -2.91 -0.02 2.54 15 7 C 0.02 1.01 5.46 84.65 0.46 1.48 15 8 N -0.92 -53.06 13.29 21.45 0.28 -52.77 15 9 Si 0.96 43.56 29.54 68.60 2.03 45.59 15 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 13 N -0.54 -25.26 11.25 -188.13 -2.12 -27.37 15 14 C 0.00 0.08 11.48 83.52 0.96 1.04 15 15 C -0.14 -4.65 6.68 40.95 0.27 -4.38 15 16 C 0.37 8.27 5.75 71.23 0.41 8.68 15 17 F -0.20 -4.75 17.06 44.97 0.77 -3.98 15 18 F -0.21 -5.03 14.72 44.97 0.66 -4.37 15 19 H 0.10 2.36 8.14 -2.38 -0.02 2.34 15 20 H 0.11 2.79 5.72 -2.39 -0.01 2.78 15 21 H 0.08 2.80 7.67 -2.39 -0.02 2.78 15 22 H 0.02 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.03 1.74 7.71 -2.39 -0.02 1.72 15 24 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 25 H 0.19 5.70 8.06 -2.91 -0.02 5.68 15 26 H 0.17 2.24 8.14 -2.39 -0.02 2.22 15 Total: -1.00 -67.35 241.10 5.98 -61.37 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 1.20 Total: 1.48 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 4.81 Total: -1.71 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -3.48 Total: -98.37 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 1.43 Total: -8.36 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.35 5.98 -61.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260247522.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.710 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds