Wall clock time and date at job start Mon Mar 30 2020 02:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30575 * 1 3 3 Si 1.86796 * 119.99931 * 2 1 4 4 H 1.48504 * 109.47252 * 239.73000 * 3 2 1 5 5 H 1.48507 * 109.47267 * 359.72462 * 3 2 1 6 6 H 1.48499 * 109.47080 * 119.72593 * 3 2 1 7 7 C 1.40345 * 119.99738 * 179.72710 * 2 1 3 8 8 H 1.08000 * 119.99265 * 179.97438 * 7 2 1 9 9 C 1.40795 * 120.00270 * 359.97438 * 7 2 1 10 10 N 1.33965 * 126.29665 * 359.68969 * 9 7 2 11 11 C 1.32751 * 109.80320 * 179.86287 * 10 9 7 12 12 C 1.41056 * 131.24333 * 180.12293 * 11 10 9 13 13 C 1.36156 * 119.41782 * 180.30936 * 12 11 10 14 14 C 1.40266 * 119.64658 * 359.97438 * 13 12 11 15 15 C 1.35272 * 120.15418 * 0.02562 * 14 13 12 16 16 N 1.35980 * 120.70724 * 359.97438 * 15 14 13 17 17 C 1.38012 * 131.95725 * 180.02562 * 16 15 14 18 18 C 1.40289 * 126.96809 * 0.02562 * 17 16 15 19 19 O 1.21600 * 120.00326 * 180.02562 * 18 17 16 20 20 H 0.97000 * 120.00337 * 0.27147 * 1 2 3 21 21 H 1.08005 * 120.29079 * 0.29005 * 12 11 10 22 22 H 1.08001 * 120.17993 * 179.97438 * 13 12 11 23 23 H 1.07993 * 119.92657 * 179.97438 * 14 13 12 24 24 H 1.08004 * 119.64704 * 180.02562 * 15 14 13 25 25 H 1.07999 * 120.00109 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2397 1.6177 0.0000 4 1 3.0984 1.6936 -1.2092 5 1 1.2747 2.7465 -0.0067 6 1 3.0884 1.6993 1.2158 7 6 2.0074 -1.2154 0.0058 8 1 3.0874 -1.2154 0.0054 9 6 1.3034 -2.4347 0.0121 10 7 -0.0281 -2.5817 0.0192 11 6 -0.3382 -3.8724 0.0208 12 6 -1.5867 -4.5289 0.0251 13 6 -1.6266 -5.8899 0.0322 14 6 -0.4284 -6.6192 0.0345 15 6 0.7601 -5.9733 0.0303 16 7 0.8121 -4.6146 0.0232 17 6 1.8729 -3.7317 0.0174 18 6 3.2384 -4.0536 0.0169 19 8 4.0718 -3.1682 0.0119 20 1 -0.4851 0.8400 -0.0040 21 1 -2.5029 -3.9570 0.0231 22 1 -2.5758 -6.4052 0.0360 23 1 -0.4549 -7.6987 0.0405 24 1 1.6777 -6.5430 0.0317 25 1 3.5494 -5.0879 0.0210 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389308.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:16 Heat of formation + Delta-G solvation = 20.302598 kcal Electronic energy + Delta-G solvation = -13683.550051 eV Core-core repulsion = 11241.304191 eV Total energy + Delta-G solvation = -2442.245860 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.064 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.98110 -39.18367 -37.75754 -35.53654 -34.19223 -31.33821 -29.87208 -28.22038 -25.36897 -23.56931 -22.96632 -21.14224 -19.20052 -18.24179 -17.56447 -16.69874 -16.49654 -16.23291 -16.02441 -15.27945 -14.91028 -14.60921 -14.40270 -13.39681 -13.19074 -12.97840 -12.63710 -12.41925 -12.37690 -11.98129 -11.58850 -11.20004 -10.62626 -10.00373 -9.55347 -8.69135 -8.55868 -6.67613 0.10439 0.20973 1.33204 1.36443 1.47890 1.71167 2.08736 2.18209 2.42421 2.93053 3.46742 3.72554 3.82628 3.94314 4.21733 4.34265 4.49027 4.96706 5.01800 5.15824 5.24328 5.45291 5.46525 5.48530 5.90014 6.16618 6.41735 6.65665 6.86414 7.19277 7.68186 8.20660 Molecular weight = 216.06amu Principal moments of inertia in cm(-1) A = 0.038155 B = 0.010571 C = 0.008302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.666075 B = 2648.202803 C = 3372.021976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.020 3.980 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.253 1.253 6 H -0.258 1.258 7 C -0.420 4.420 8 H 0.098 0.902 9 C 0.242 3.758 10 N -0.556 5.556 11 C 0.251 3.749 12 C -0.158 4.158 13 C -0.051 4.051 14 C -0.186 4.186 15 C 0.066 3.934 16 N -0.356 5.356 17 C -0.349 4.349 18 C 0.390 3.610 19 O -0.561 6.561 20 H 0.292 0.708 21 H 0.144 0.856 22 H 0.181 0.819 23 H 0.192 0.808 24 H 0.182 0.818 25 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.797 -10.066 0.050 10.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.204 4.204 3 Si 0.816 3.184 4 H -0.182 1.182 5 H -0.177 1.177 6 H -0.183 1.183 7 C -0.450 4.450 8 H 0.116 0.884 9 C 0.116 3.884 10 N -0.283 5.283 11 C 0.006 3.994 12 C -0.180 4.180 13 C -0.075 4.075 14 C -0.209 4.209 15 C -0.063 4.063 16 N -0.032 5.032 17 C -0.452 4.452 18 C 0.266 3.734 19 O -0.449 6.449 20 H 0.103 0.897 21 H 0.162 0.838 22 H 0.198 0.802 23 H 0.209 0.791 24 H 0.199 0.801 25 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.970 -8.791 0.054 9.646 hybrid contribution 0.739 0.166 -0.006 0.757 sum -3.232 -8.625 0.048 9.211 Atomic orbital electron populations 1.69982 1.09122 1.30807 1.27297 1.27301 0.95900 1.05174 0.91976 0.85037 0.78657 0.74302 0.80370 1.18231 1.17670 1.18256 1.19848 0.95633 0.89362 1.40191 0.88394 1.19124 0.88365 0.92040 0.88845 1.71332 1.14492 1.11933 1.30510 1.22428 0.89272 0.88469 0.99188 1.20495 0.92934 0.95767 1.08781 1.21485 1.00771 0.91602 0.93636 1.21147 0.89528 1.02486 1.07744 1.22396 1.03008 0.80591 1.00259 1.42560 1.07683 1.06267 1.46724 1.20953 0.90785 0.89953 1.43462 1.20635 0.84751 0.94069 0.73988 1.90461 1.54154 1.53719 1.46614 0.89744 0.83826 0.80218 0.79100 0.80075 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -42.11 11.93 21.89 0.26 -41.85 15 2 C 0.02 1.09 5.50 85.39 0.47 1.56 15 3 Si 1.00 40.93 29.56 68.60 2.03 42.95 15 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 5 H -0.25 -9.32 7.11 99.48 0.71 -8.61 15 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 7 C -0.42 -25.48 8.94 23.41 0.21 -25.27 15 8 H 0.10 6.03 6.05 -2.91 -0.02 6.01 15 9 C 0.24 14.73 6.71 40.29 0.27 15.00 15 10 N -0.56 -32.87 9.47 -185.90 -1.76 -34.64 15 11 C 0.25 12.22 7.74 134.14 1.04 13.26 15 12 C -0.16 -5.71 10.11 22.48 0.23 -5.48 15 13 C -0.05 -1.26 10.07 22.28 0.22 -1.03 15 14 C -0.19 -4.22 10.00 22.08 0.22 -3.99 15 15 C 0.07 2.01 10.78 83.37 0.90 2.90 15 16 N -0.36 -15.92 2.95 -342.75 -1.01 -16.93 15 17 C -0.35 -18.50 6.88 39.51 0.27 -18.23 15 18 C 0.39 18.75 11.29 68.32 0.77 19.52 15 19 O -0.56 -31.18 15.58 -4.03 -0.06 -31.25 15 20 H 0.29 14.47 8.29 -92.71 -0.77 13.70 15 21 H 0.14 4.87 8.06 -2.91 -0.02 4.85 15 22 H 0.18 2.63 8.06 -2.91 -0.02 2.61 15 23 H 0.19 2.31 8.06 -2.91 -0.02 2.29 15 24 H 0.18 4.09 7.95 -2.91 -0.02 4.06 15 25 H 0.10 3.67 7.95 -2.91 -0.02 3.65 15 Total: -1.00 -79.56 233.22 5.28 -74.29 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.22 Total: 9.19 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.60 Total: -1.76 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -2.51 Total: -93.41 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.06 Total: -31.25 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Total: -79.56 5.28 -74.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389308.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.588 kcal (2) G-P(sol) polarization free energy of solvation -79.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds