Wall clock time and date at job start Mon Mar 30 2020 02:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31480 * 1 3 3 Si 1.86800 * 119.99630 * 2 1 4 4 H 1.48497 * 109.46870 * 240.00091 * 3 2 1 5 5 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46521 * 120.00278 * 3 2 1 7 7 C 1.38883 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00315 * 179.97438 * 7 2 1 9 9 N 1.36855 * 120.00314 * 359.97438 * 7 2 1 10 10 C 1.36770 * 120.00260 * 179.72577 * 9 7 2 11 11 N 1.29710 * 119.22172 * 0.02562 * 10 9 7 12 12 C 1.36603 * 121.73463 * 182.51249 * 11 10 9 13 13 C 1.39701 * 120.25306 * 196.42821 * 12 11 10 14 14 C 1.37916 * 119.80013 * 179.55839 * 13 12 11 15 15 C 1.38399 * 120.24532 * 359.96722 * 14 13 12 16 16 C 1.38428 * 120.26589 * 0.20592 * 15 14 13 17 17 C 1.37808 * 120.01878 * 0.02562 * 16 15 14 18 18 C 1.50798 * 120.37732 * 179.30669 * 17 16 15 19 19 C 1.50497 * 119.22473 * 179.72303 * 10 9 7 20 20 H 0.96999 * 120.00208 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99773 * 359.97438 * 9 7 2 22 22 H 1.08008 * 120.10022 * 359.53777 * 13 12 11 23 23 H 1.08007 * 119.87917 * 179.97438 * 14 13 12 24 24 H 1.07990 * 119.86935 * 180.18124 * 15 14 13 25 25 H 1.07998 * 119.98749 * 179.97438 * 16 15 14 26 26 H 1.09004 * 109.54210 * 267.44126 * 18 17 16 27 27 H 1.09001 * 109.53722 * 27.60955 * 18 17 16 28 28 H 1.08992 * 109.41425 * 264.87869 * 19 10 9 29 29 H 1.09006 * 109.41045 * 24.66064 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.1024 1.6965 -1.2125 5 1 1.2837 2.7465 0.0006 6 1 3.1025 1.6963 1.2125 7 6 2.0092 -1.2028 -0.0005 8 1 3.0892 -1.2028 -0.0010 9 7 1.3250 -2.3880 -0.0005 10 6 2.0089 -3.5724 -0.0067 11 7 3.3058 -3.5548 -0.0121 12 6 4.0398 -4.7055 -0.0693 13 6 5.3958 -4.6928 0.2665 14 6 6.1259 -5.8617 0.2142 15 6 5.5198 -7.0455 -0.1687 16 6 4.1775 -7.0648 -0.5063 17 6 3.4388 -5.9023 -0.4625 18 6 1.9798 -5.9110 -0.8435 19 6 1.2389 -4.8655 -0.0003 20 1 -0.4850 0.8400 0.0004 21 1 0.3550 -2.3880 0.0002 22 1 5.8711 -3.7702 0.5659 23 1 7.1744 -5.8533 0.4732 24 1 6.0965 -7.9579 -0.2047 25 1 3.7092 -7.9911 -0.8049 26 1 1.8778 -5.6704 -1.9017 27 1 1.5589 -6.8981 -0.6518 28 1 1.1413 -5.2239 1.0244 29 1 0.2470 -4.6986 -0.4206 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260398457.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:42 Heat of formation + Delta-G solvation = 34.038551 kcal Electronic energy + Delta-G solvation = -13667.825716 eV Core-core repulsion = 11362.008586 eV Total energy + Delta-G solvation = -2305.817130 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.30506 -36.88743 -34.33483 -32.25420 -31.70098 -29.11061 -28.16549 -25.15691 -23.25282 -21.70201 -21.01471 -18.23204 -18.16205 -15.84385 -15.66978 -14.93709 -14.55126 -14.20486 -13.64960 -13.29923 -13.03068 -12.46709 -12.36300 -11.89258 -11.80179 -11.49696 -11.23466 -10.70502 -10.64310 -10.57599 -10.40553 -10.18688 -9.57457 -8.61017 -8.04429 -7.80268 -6.76300 -6.58760 -3.92053 1.85431 2.18659 3.10493 3.12688 3.17153 3.65755 3.95727 4.73168 4.83656 5.13928 5.26881 5.36701 5.54230 5.68402 5.76959 5.88493 6.01395 6.04034 6.14172 6.39702 6.44727 6.50791 6.84147 7.04904 7.22163 7.29083 7.34484 7.46109 7.76753 7.93681 8.56516 9.03194 9.14814 9.90904 10.38479 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.043924 B = 0.007756 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.316804 B = 3609.294752 C = 4189.894971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.021 3.979 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.278 4.278 8 H 0.121 0.879 9 N -0.498 5.498 10 C 0.340 3.660 11 N -0.635 5.635 12 C 0.209 3.791 13 C -0.161 4.161 14 C -0.093 4.093 15 C -0.203 4.203 16 C -0.082 4.082 17 C -0.200 4.200 18 C -0.057 4.057 19 C -0.115 4.115 20 H 0.279 0.721 21 H 0.404 0.596 22 H 0.114 0.886 23 H 0.106 0.894 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -7.564 -0.302 7.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.410 4.410 8 H 0.138 0.862 9 N -0.102 5.102 10 C 0.073 3.927 11 N -0.369 5.369 12 C 0.094 3.906 13 C -0.183 4.183 14 C -0.112 4.112 15 C -0.223 4.223 16 C -0.101 4.101 17 C -0.205 4.205 18 C -0.095 4.095 19 C -0.156 4.156 20 H 0.089 0.911 21 H 0.240 0.760 22 H 0.132 0.868 23 H 0.124 0.876 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.524 -6.459 -0.262 6.940 hybrid contribution -0.527 0.046 -0.075 0.534 sum 1.997 -6.414 -0.337 6.726 Atomic orbital electron populations 1.69623 1.06283 1.29379 1.46903 1.25537 0.95771 1.00641 0.96461 0.85735 0.78785 0.79244 0.79593 1.19394 1.20754 1.19386 1.20125 0.94377 0.81615 1.44873 0.86175 1.40801 1.08376 1.03043 1.57987 1.21013 0.89829 0.85824 0.96029 1.67705 1.04527 1.25815 1.38880 1.18313 0.93331 0.87256 0.91744 1.20647 0.93329 0.97744 1.06607 1.20760 0.98444 0.92830 0.99213 1.20613 0.95176 0.97425 1.09126 1.20551 0.94050 0.96347 0.99103 1.20202 0.95938 0.94711 1.09692 1.20239 0.92137 0.98010 0.99090 1.21055 0.98847 0.94399 1.01328 0.91055 0.76028 0.86813 0.87550 0.87892 0.87905 0.91630 0.91218 0.90400 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.53 13.05 55.49 0.72 -21.81 15 2 C 0.02 0.53 5.50 -17.46 -0.10 0.43 15 3 Si 0.94 19.84 29.55 -169.99 -5.02 14.81 15 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.27 -5.66 7.11 56.52 0.40 -5.25 15 7 C -0.28 -7.22 9.66 -15.07 -0.15 -7.36 15 8 H 0.12 3.26 7.03 -52.49 -0.37 2.89 15 9 N -0.50 -11.92 5.35 -9.09 -0.05 -11.97 15 10 C 0.34 7.70 7.42 -154.57 -1.15 6.56 15 11 N -0.64 -15.48 8.93 -8.26 -0.07 -15.55 15 12 C 0.21 4.63 6.48 -84.69 -0.55 4.08 15 13 C -0.16 -3.29 10.00 -39.15 -0.39 -3.68 15 14 C -0.09 -1.64 10.03 -39.64 -0.40 -2.03 15 15 C -0.20 -3.39 10.05 -39.45 -0.40 -3.79 15 16 C -0.08 -1.41 9.70 -39.67 -0.38 -1.80 15 17 C -0.20 -3.90 5.68 -104.23 -0.59 -4.49 15 18 C -0.06 -0.97 6.08 -27.63 -0.17 -1.14 15 19 C -0.11 -2.05 6.06 -27.78 -0.17 -2.22 15 20 H 0.28 6.72 8.31 -40.82 -0.34 6.38 15 21 H 0.40 9.26 7.85 -40.82 -0.32 8.94 15 22 H 0.11 2.29 8.06 -52.48 -0.42 1.87 15 23 H 0.11 1.55 8.06 -52.48 -0.42 1.13 15 24 H 0.10 1.44 8.06 -52.49 -0.42 1.02 15 25 H 0.10 1.49 8.06 -52.49 -0.42 1.07 15 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.07 0.98 8.08 -51.93 -0.42 0.56 15 28 H 0.08 1.33 8.14 -51.93 -0.42 0.90 15 29 H 0.07 1.16 8.09 -51.93 -0.42 0.74 15 LS Contribution 252.72 15.07 3.81 3.81 Total: -1.00 -27.65 252.72 -8.25 -35.90 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -3.20 Total: 10.25 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -4.44 Total: -15.44 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.60 Total: -49.33 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.65 -8.25 -35.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260398457.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.937 kcal (2) G-P(sol) polarization free energy of solvation -27.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds