Wall clock time and date at job start Mon Mar 30 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31480 * 1 3 3 Si 1.86800 * 119.99630 * 2 1 4 4 H 1.48497 * 109.46870 * 240.00091 * 3 2 1 5 5 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46521 * 120.00278 * 3 2 1 7 7 C 1.38883 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00315 * 179.97438 * 7 2 1 9 9 N 1.36855 * 120.00314 * 359.97438 * 7 2 1 10 10 C 1.36770 * 120.00260 * 179.72577 * 9 7 2 11 11 N 1.29710 * 119.22172 * 0.02562 * 10 9 7 12 12 C 1.36603 * 121.73463 * 182.51249 * 11 10 9 13 13 C 1.39701 * 120.25306 * 196.42821 * 12 11 10 14 14 C 1.37916 * 119.80013 * 179.55839 * 13 12 11 15 15 C 1.38399 * 120.24532 * 359.96722 * 14 13 12 16 16 C 1.38428 * 120.26589 * 0.20592 * 15 14 13 17 17 C 1.37808 * 120.01878 * 0.02562 * 16 15 14 18 18 C 1.50798 * 120.37732 * 179.30669 * 17 16 15 19 19 C 1.50497 * 119.22473 * 179.72303 * 10 9 7 20 20 H 0.96999 * 120.00208 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99773 * 359.97438 * 9 7 2 22 22 H 1.08008 * 120.10022 * 359.53777 * 13 12 11 23 23 H 1.08007 * 119.87917 * 179.97438 * 14 13 12 24 24 H 1.07990 * 119.86935 * 180.18124 * 15 14 13 25 25 H 1.07998 * 119.98749 * 179.97438 * 16 15 14 26 26 H 1.09004 * 109.54210 * 267.44126 * 18 17 16 27 27 H 1.09001 * 109.53722 * 27.60955 * 18 17 16 28 28 H 1.08992 * 109.41425 * 264.87869 * 19 10 9 29 29 H 1.09006 * 109.41045 * 24.66064 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.1024 1.6965 -1.2125 5 1 1.2837 2.7465 0.0006 6 1 3.1025 1.6963 1.2125 7 6 2.0092 -1.2028 -0.0005 8 1 3.0892 -1.2028 -0.0010 9 7 1.3250 -2.3880 -0.0005 10 6 2.0089 -3.5724 -0.0067 11 7 3.3058 -3.5548 -0.0121 12 6 4.0398 -4.7055 -0.0693 13 6 5.3958 -4.6928 0.2665 14 6 6.1259 -5.8617 0.2142 15 6 5.5198 -7.0455 -0.1687 16 6 4.1775 -7.0648 -0.5063 17 6 3.4388 -5.9023 -0.4625 18 6 1.9798 -5.9110 -0.8435 19 6 1.2389 -4.8655 -0.0003 20 1 -0.4850 0.8400 0.0004 21 1 0.3550 -2.3880 0.0002 22 1 5.8711 -3.7702 0.5659 23 1 7.1744 -5.8533 0.4732 24 1 6.0965 -7.9579 -0.2047 25 1 3.7092 -7.9911 -0.8049 26 1 1.8778 -5.6704 -1.9017 27 1 1.5589 -6.8981 -0.6518 28 1 1.1413 -5.2239 1.0244 29 1 0.2470 -4.6986 -0.4206 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260398457.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:41 Heat of formation + Delta-G solvation = 18.824636 kcal Electronic energy + Delta-G solvation = -13668.485441 eV Core-core repulsion = 11362.008586 eV Total energy + Delta-G solvation = -2306.476855 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.86586 -38.50451 -35.96794 -33.81487 -33.41386 -30.58716 -29.76030 -26.92535 -24.74470 -23.27812 -22.51066 -19.95578 -19.77104 -17.49915 -17.15796 -16.46977 -16.22272 -15.84193 -15.13461 -14.90995 -14.53412 -14.03317 -13.81674 -13.57371 -13.22929 -13.07024 -12.82219 -12.45415 -12.16740 -12.10474 -12.06415 -11.59769 -11.25221 -10.33412 -9.54503 -9.44267 -8.57191 -8.25787 -5.83521 0.31486 0.71201 1.40212 1.43276 1.50726 2.08998 2.24829 3.04048 3.11758 3.46696 3.79585 3.97844 4.14665 4.31227 4.41526 4.48381 4.58347 4.71139 4.79439 4.94346 5.01622 5.08779 5.34853 5.42246 5.57157 5.74866 5.81325 5.87421 6.11547 6.39300 6.74414 7.25824 7.36576 8.21540 8.58640 Molecular weight = 216.10amu Principal moments of inertia in cm(-1) A = 0.043924 B = 0.007756 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.316804 B = 3609.294752 C = 4189.894971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.016 4.016 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.307 4.307 8 H 0.095 0.905 9 N -0.524 5.524 10 C 0.347 3.653 11 N -0.674 5.674 12 C 0.160 3.840 13 C -0.181 4.181 14 C -0.095 4.095 15 C -0.184 4.184 16 C -0.084 4.084 17 C -0.204 4.204 18 C -0.055 4.055 19 C -0.112 4.112 20 H 0.280 0.720 21 H 0.405 0.595 22 H 0.100 0.900 23 H 0.137 0.863 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -10.596 -0.588 11.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.217 4.217 3 Si 0.820 3.180 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.438 4.438 8 H 0.113 0.887 9 N -0.132 5.132 10 C 0.078 3.922 11 N -0.409 5.409 12 C 0.049 3.951 13 C -0.203 4.203 14 C -0.114 4.114 15 C -0.204 4.204 16 C -0.103 4.103 17 C -0.209 4.209 18 C -0.093 4.093 19 C -0.153 4.153 20 H 0.090 0.910 21 H 0.241 0.759 22 H 0.118 0.882 23 H 0.155 0.845 24 H 0.161 0.839 25 H 0.160 0.840 26 H 0.083 0.917 27 H 0.129 0.871 28 H 0.108 0.892 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.384 -9.568 -0.550 10.164 hybrid contribution -0.483 0.571 0.018 0.748 sum 2.902 -8.997 -0.532 9.469 Atomic orbital electron populations 1.69679 1.06962 1.29792 1.49004 1.26154 0.96536 1.02747 0.96296 0.84923 0.77711 0.76340 0.79061 1.19667 1.19595 1.19614 1.19933 0.93487 0.83227 1.47187 0.88700 1.40722 1.08192 1.02936 1.61399 1.21747 0.90099 0.87250 0.93066 1.67639 1.06034 1.28243 1.39001 1.18691 0.94076 0.88001 0.94339 1.20847 0.93346 0.98743 1.07380 1.21130 0.99871 0.92033 0.98356 1.21189 0.95328 0.98338 1.05576 1.21021 0.94330 0.96913 0.98006 1.20576 0.97488 0.94357 1.08512 1.20356 0.90646 0.99590 0.98708 1.21148 0.99518 0.92093 1.02577 0.91007 0.75929 0.88205 0.84471 0.83916 0.84044 0.91669 0.87139 0.89245 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.27 13.05 21.66 0.28 -47.99 15 2 C -0.02 -0.84 5.50 84.90 0.47 -0.37 15 3 Si 1.00 42.25 29.55 68.60 2.03 44.27 15 4 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 7 C -0.31 -16.81 9.66 84.06 0.81 -16.00 15 8 H 0.10 5.52 7.03 -2.91 -0.02 5.50 15 9 N -0.52 -26.16 5.35 -182.67 -0.98 -27.14 15 10 C 0.35 15.99 7.42 137.73 1.02 17.02 15 11 N -0.67 -33.87 8.93 -180.05 -1.61 -35.48 15 12 C 0.16 7.07 6.48 39.08 0.25 7.32 15 13 C -0.18 -7.35 10.00 22.55 0.23 -7.13 15 14 C -0.10 -3.05 10.03 22.23 0.22 -2.82 15 15 C -0.18 -5.23 10.05 22.35 0.22 -5.01 15 16 C -0.08 -2.50 9.70 22.21 0.22 -2.28 15 17 C -0.20 -7.43 5.68 -19.61 -0.11 -7.54 15 18 C -0.06 -1.71 6.08 30.01 0.18 -1.52 15 19 C -0.11 -3.83 6.06 29.92 0.18 -3.64 15 20 H 0.28 13.89 8.31 -92.71 -0.77 13.12 15 21 H 0.40 19.36 7.85 -92.70 -0.73 18.63 15 22 H 0.10 4.18 8.06 -2.91 -0.02 4.15 15 23 H 0.14 3.48 8.06 -2.91 -0.02 3.46 15 24 H 0.14 3.00 8.06 -2.92 -0.02 2.98 15 25 H 0.14 3.15 8.06 -2.91 -0.02 3.13 15 26 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 27 H 0.11 2.53 8.08 -2.39 -0.02 2.51 15 28 H 0.09 2.86 8.14 -2.39 -0.02 2.84 15 29 H 0.10 2.89 8.09 -2.38 -0.02 2.87 15 Total: -1.00 -62.57 252.72 3.85 -58.72 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.43 Total: 29.60 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 3.69 Total: -21.99 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -2.30 Total: -110.60 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -62.57 3.85 -58.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260398457.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.548 kcal (2) G-P(sol) polarization free energy of solvation -62.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds