Wall clock time and date at job start Mon Mar 30 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33940 * 125.33378 * 2 1 4 4 C 1.34976 * 111.57323 * 180.02562 * 3 2 1 5 5 C 1.40215 * 108.10402 * 0.02562 * 4 3 2 6 6 C 1.39004 * 120.34785 * 180.02562 * 5 4 3 7 7 C 1.37977 * 119.64818 * 359.97438 * 6 5 4 8 8 C 1.38568 * 120.15206 * 359.74865 * 7 6 5 9 9 C 1.37959 * 120.64967 * 0.51356 * 8 7 6 10 10 C 1.50694 * 119.99368 * 179.76385 * 9 8 7 11 11 C 1.38647 * 125.33433 * 180.02562 * 2 1 3 12 12 C 1.40963 * 127.30740 * 359.97438 * 11 2 1 13 13 H 1.07999 * 119.99917 * 320.77025 * 12 11 2 14 14 C 1.39775 * 119.99830 * 140.77298 * 12 11 2 15 15 N 1.31013 * 119.99947 * 157.72942 * 14 12 11 16 16 Si 1.86803 * 120.00331 * 337.72595 * 14 12 11 17 17 H 1.48497 * 109.47142 * 94.86536 * 16 14 12 18 18 H 1.48502 * 109.47226 * 214.86601 * 16 14 12 19 19 H 1.48502 * 109.46726 * 334.86612 * 16 14 12 20 20 H 1.09006 * 109.47050 * 264.68884 * 1 2 3 21 21 H 1.09007 * 109.47224 * 24.68291 * 1 2 3 22 22 H 1.09003 * 109.47695 * 144.68645 * 1 2 3 23 23 H 1.07998 * 120.17244 * 180.02562 * 6 5 4 24 24 H 1.08000 * 119.92514 * 179.97438 * 7 6 5 25 25 H 1.08008 * 119.67613 * 180.27825 * 8 7 6 26 26 H 1.08992 * 109.47402 * 269.72111 * 10 9 8 27 27 H 1.09002 * 109.47293 * 29.72286 * 10 9 8 28 28 H 1.09005 * 109.47061 * 149.71974 * 10 9 8 29 29 H 0.96994 * 119.99993 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2816 1.0927 0.0000 4 6 3.5926 0.7716 -0.0006 5 6 3.6988 -0.6265 -0.0016 6 6 4.9481 -1.2360 -0.0018 7 6 6.0873 -0.4575 -0.0015 8 6 5.9859 0.9245 -0.0063 9 6 4.7508 1.5391 -0.0008 10 6 4.6578 3.0432 -0.0007 11 6 2.3088 -1.1311 -0.0005 12 6 1.8883 -2.4765 -0.0006 13 1 1.0359 -2.7759 0.5912 14 6 2.5745 -3.4231 -0.7666 15 7 2.4965 -4.6946 -0.4604 16 14 3.6028 -2.8755 -2.2267 17 1 5.0165 -2.7110 -1.8028 18 1 3.5237 -3.8991 -3.2997 19 1 3.0857 -1.5809 -2.7385 20 1 -0.3633 -0.0951 1.0233 21 1 -0.3634 0.9338 -0.4292 22 1 -0.3634 -0.8386 -0.5940 23 1 5.0266 -2.3131 -0.0030 24 1 7.0603 -0.9263 -0.0013 25 1 6.8827 1.5264 -0.0107 26 1 4.6352 3.4058 1.0268 27 1 5.5238 3.4608 -0.5144 28 1 3.7472 3.3509 -0.5148 29 1 2.9724 -5.3516 -0.9922 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260729373.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:01 Heat of formation + Delta-G solvation = -7.708537 kcal Electronic energy + Delta-G solvation = -14204.973339 eV Core-core repulsion = 11865.053168 eV Total energy + Delta-G solvation = -2339.920170 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.79951 -38.76631 -35.99910 -34.10192 -32.67443 -31.70314 -28.87182 -27.73303 -26.30201 -23.41232 -21.93583 -21.16057 -19.26335 -17.81273 -16.93904 -16.82803 -16.45985 -16.17994 -14.92490 -14.76249 -14.42264 -14.32355 -13.82974 -13.56722 -13.55230 -13.28468 -13.02884 -12.88883 -12.58568 -12.39648 -12.05099 -12.01972 -11.55861 -11.03965 -10.22541 -9.29071 -8.82740 -8.73213 -6.36358 0.12022 0.55198 1.13068 1.24855 1.39554 1.69431 2.14299 2.22781 2.74901 3.07834 3.83538 3.97240 4.09521 4.40524 4.43280 4.52776 4.69423 4.80733 4.82079 4.84681 4.85649 4.98996 5.11626 5.22579 5.33487 5.53520 5.55612 5.68789 5.78984 6.03554 6.19572 6.51857 6.80806 6.90388 8.29130 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.027498 B = 0.014744 C = 0.010682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.011275 B = 1898.572532 C = 2620.603282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 C -0.157 4.157 3 O -0.204 6.204 4 C 0.029 3.971 5 C -0.173 4.173 6 C -0.103 4.103 7 C -0.149 4.149 8 C -0.096 4.096 9 C -0.099 4.099 10 C -0.100 4.100 11 C -0.019 4.019 12 C -0.478 4.478 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.860 5.860 16 Si 0.928 3.072 17 H -0.230 1.230 18 H -0.273 1.273 19 H -0.279 1.279 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.107 0.893 24 H 0.154 0.846 25 H 0.174 0.826 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.639 10.583 -1.418 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.204 4.204 3 O -0.108 6.108 4 C -0.019 4.019 5 C -0.174 4.174 6 C -0.121 4.121 7 C -0.167 4.167 8 C -0.114 4.114 9 C -0.100 4.100 10 C -0.156 4.156 11 C -0.021 4.021 12 C -0.510 4.510 13 H 0.077 0.923 14 C -0.149 4.149 15 N -0.490 5.490 16 Si 0.751 3.249 17 H -0.154 1.154 18 H -0.198 1.198 19 H -0.204 1.204 20 H 0.086 0.914 21 H 0.099 0.901 22 H 0.091 0.909 23 H 0.125 0.875 24 H 0.172 0.828 25 H 0.192 0.808 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.559 10.570 -1.436 12.522 hybrid contribution -0.142 -0.801 -0.382 0.899 sum 6.417 9.769 -1.818 11.829 Atomic orbital electron populations 1.19865 0.83767 1.02852 1.02261 1.23239 0.94209 0.82574 1.20361 1.83479 1.14426 1.34858 1.77994 1.19911 0.84229 0.93445 1.04330 1.20498 0.95311 0.94385 1.07202 1.20776 0.91514 0.99783 1.00038 1.21263 0.97868 0.94354 1.03227 1.21134 0.96365 0.94253 0.99634 1.19294 0.88433 0.97202 1.05027 1.20695 1.03402 0.88380 1.03118 1.18876 0.89065 0.93779 1.00408 1.18267 1.14797 0.90244 1.27677 0.92294 1.26313 0.95314 0.94045 0.99199 1.69833 1.38694 1.03101 1.37341 0.86181 0.81497 0.78306 0.78926 1.15414 1.19825 1.20440 0.91381 0.90118 0.90913 0.87468 0.82835 0.80847 0.90298 0.88468 0.92724 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.23 10.18 71.23 0.73 -0.50 15 2 C -0.16 -7.78 7.41 25.78 0.19 -7.59 15 3 O -0.20 -9.71 10.52 -5.77 -0.06 -9.78 15 4 C 0.03 1.33 7.02 22.92 0.16 1.49 15 5 C -0.17 -8.69 5.04 -20.06 -0.10 -8.79 15 6 C -0.10 -4.62 7.29 22.39 0.16 -4.45 15 7 C -0.15 -5.14 10.04 22.29 0.22 -4.91 15 8 C -0.10 -2.91 9.66 22.28 0.22 -2.69 15 9 C -0.10 -3.48 5.89 -19.76 -0.12 -3.60 15 10 C -0.10 -2.56 10.01 71.23 0.71 -1.84 15 11 C -0.02 -1.03 4.98 -19.96 -0.10 -1.12 15 12 C -0.48 -28.12 9.48 23.31 0.22 -27.90 15 13 H 0.06 3.68 8.06 -2.91 -0.02 3.66 15 14 C 0.06 3.57 5.30 85.19 0.45 4.02 15 15 N -0.86 -49.08 13.94 21.81 0.30 -48.77 15 16 Si 0.93 44.53 24.34 68.60 1.67 46.20 15 17 H -0.23 -10.13 5.38 99.48 0.54 -9.60 15 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 15 19 H -0.28 -14.36 7.11 99.48 0.71 -13.66 15 20 H 0.07 2.47 8.14 -2.38 -0.02 2.45 15 21 H 0.08 2.66 8.14 -2.38 -0.02 2.64 15 22 H 0.07 2.92 8.05 -2.39 -0.02 2.90 15 23 H 0.11 5.01 5.95 -2.91 -0.02 5.00 15 24 H 0.15 4.08 8.06 -2.91 -0.02 4.06 15 25 H 0.17 3.44 8.06 -2.91 -0.02 3.42 15 26 H 0.08 1.81 8.14 -2.39 -0.02 1.80 15 27 H 0.10 1.82 8.08 -2.39 -0.02 1.80 15 28 H 0.05 1.50 8.09 -2.38 -0.02 1.48 15 29 H 0.29 14.86 8.30 -92.71 -0.77 14.09 15 Total: -1.00 -67.37 247.78 5.64 -61.73 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.98 Total: 8.51 kcal Atomic # 6 Polarization: -60.64 SS G_CDS: 2.75 Total: -57.90 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.30 Total: -48.77 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.06 Total: -9.78 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.67 Total: 46.20 kcal Total: -67.37 5.64 -61.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260729373.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.023 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds