Wall clock time and date at job start Mon Mar 30 2020 02:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33943 * 125.33681 * 2 1 4 4 C 1.34983 * 111.57327 * 180.02562 * 3 2 1 5 5 C 1.38982 * 132.70821 * 180.02562 * 4 3 2 6 6 C 1.37915 * 120.01710 * 179.97438 * 5 4 3 7 7 C 1.50694 * 119.67557 * 180.02562 * 6 5 4 8 8 C 1.38614 * 120.64554 * 0.02562 * 6 5 4 9 9 C 1.37928 * 120.15505 * 0.25852 * 8 6 5 10 10 C 1.39046 * 119.65071 * 359.47147 * 9 8 6 11 11 C 1.38652 * 125.33791 * 180.02562 * 2 1 3 12 12 C 1.40950 * 127.31036 * 359.97438 * 11 2 1 13 13 H 1.07997 * 120.00135 * 30.12055 * 12 11 2 14 14 C 1.39783 * 119.99816 * 210.11580 * 12 11 2 15 15 N 1.31005 * 119.99942 * 19.06867 * 14 12 11 16 16 Si 1.86802 * 120.00139 * 199.06345 * 14 12 11 17 17 H 1.48497 * 109.46905 * 60.00146 * 16 14 12 18 18 H 1.48499 * 109.47280 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46782 * 300.00317 * 16 14 12 20 20 H 1.09002 * 109.46827 * 356.20256 * 1 2 3 21 21 H 1.08999 * 109.46911 * 116.19842 * 1 2 3 22 22 H 1.08995 * 109.46996 * 236.20303 * 1 2 3 23 23 H 1.08001 * 119.99138 * 359.97438 * 5 4 3 24 24 H 1.08997 * 109.47205 * 269.97625 * 7 6 5 25 25 H 1.09009 * 109.47404 * 29.97288 * 7 6 5 26 26 H 1.09002 * 109.47252 * 149.97260 * 7 6 5 27 27 H 1.08009 * 119.92144 * 179.97438 * 8 6 5 28 28 H 1.08000 * 120.17965 * 179.74920 * 9 8 6 29 29 H 0.97003 * 120.00061 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2817 1.0927 0.0000 4 6 3.5928 0.7715 -0.0006 5 6 4.7513 1.5392 -0.0003 6 6 5.9861 0.9248 -0.0005 7 6 7.2373 1.7646 0.0003 8 6 6.0874 -0.4576 -0.0015 9 6 4.9486 -1.2358 -0.0077 10 6 3.6989 -0.6263 -0.0017 11 6 2.3089 -1.1311 -0.0005 12 6 1.8886 -2.4764 -0.0006 13 1 0.9552 -2.7505 -0.4697 14 6 2.6799 -3.4559 0.6063 15 7 3.5930 -3.1115 1.4803 16 14 2.4353 -5.2560 0.1713 17 1 2.6743 -5.4511 -1.2812 18 1 3.3911 -6.0870 0.9467 19 1 1.0456 -5.6610 0.5032 20 1 -0.3633 1.0254 0.0681 21 1 -0.3633 -0.4537 -0.9221 22 1 -0.3633 -0.5716 0.8540 23 1 4.6847 2.6171 0.0000 24 1 7.5394 1.9675 -1.0271 25 1 7.0428 2.7060 0.5144 26 1 8.0348 1.2280 0.5143 27 1 7.0604 -0.9266 -0.0021 28 1 5.0271 -2.3130 -0.0125 29 1 4.1419 -3.7912 1.9018 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260730435.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:04 Heat of formation + Delta-G solvation = 4.027049 kcal Electronic energy + Delta-G solvation = -14014.516691 eV Core-core repulsion = 11675.105414 eV Total energy + Delta-G solvation = -2339.411277 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.64419 -37.03308 -34.11581 -31.50113 -31.04611 -29.29943 -27.92432 -25.81000 -23.70298 -21.78412 -20.23394 -19.10995 -16.95016 -15.81996 -15.10083 -14.80256 -14.59702 -14.06333 -13.14467 -13.05813 -12.73287 -12.47946 -12.06523 -11.94412 -11.64960 -11.54143 -11.26308 -11.10343 -10.79656 -10.60840 -10.31579 -10.14821 -9.52620 -9.11217 -8.36511 -7.36972 -6.88724 -6.51404 -4.24263 2.12173 2.50714 3.01252 3.09999 3.13586 3.78599 3.99186 4.23354 4.76036 5.26305 5.57875 5.65457 5.87821 5.94013 5.98961 6.21709 6.24109 6.33600 6.51274 6.56888 6.65806 6.72182 6.93487 7.09844 7.19475 7.36617 7.52490 7.66490 7.78729 7.97632 8.31728 8.72247 8.82623 9.02827 10.30316 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.027380 B = 0.012067 C = 0.008663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.404593 B = 2319.730267 C = 3231.330204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 C -0.201 4.201 3 O -0.207 6.207 4 C 0.054 3.946 5 C -0.142 4.142 6 C -0.080 4.080 7 C -0.101 4.101 8 C -0.183 4.183 9 C -0.017 4.017 10 C -0.117 4.117 11 C 0.062 3.938 12 C -0.456 4.456 13 H 0.080 0.920 14 C 0.079 3.921 15 N -0.802 5.802 16 Si 0.904 3.096 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.266 1.266 20 H 0.046 0.954 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.110 0.890 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.123 0.877 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 2.609 -1.869 4.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.247 4.247 3 O -0.111 6.111 4 C 0.005 3.995 5 C -0.161 4.161 6 C -0.080 4.080 7 C -0.158 4.158 8 C -0.201 4.201 9 C -0.035 4.035 10 C -0.118 4.118 11 C 0.060 3.940 12 C -0.486 4.486 13 H 0.098 0.902 14 C -0.137 4.137 15 N -0.429 5.429 16 Si 0.728 3.272 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.191 1.191 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.128 0.872 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.141 0.859 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.127 2.774 -1.701 4.513 hybrid contribution 0.035 -1.043 -0.031 1.044 sum 3.162 1.731 -1.733 4.000 Atomic orbital electron populations 1.19569 0.87117 1.00124 1.00999 1.22127 0.92036 0.82895 1.27642 1.83458 1.13873 1.35280 1.78455 1.19543 0.83682 0.94138 1.02151 1.19399 0.88455 0.97883 1.10319 1.19274 0.93246 0.93894 1.01594 1.20646 0.95015 0.98755 1.01374 1.20667 0.97727 0.92806 1.08943 1.20650 0.90111 0.99781 0.92991 1.20017 0.95099 0.92002 1.04705 1.18452 0.87649 0.92956 0.94986 1.18544 1.06558 0.90026 1.33514 0.90179 1.25768 0.93935 1.01083 0.92929 1.69952 1.17897 1.36126 1.18920 0.86449 0.79107 0.81941 0.79672 1.19002 1.20466 1.19090 0.93495 0.92855 0.92073 0.87177 0.92020 0.92292 0.92110 0.87363 0.85890 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.44 10.15 36.00 0.37 -0.08 15 2 C -0.20 -5.19 7.41 -34.16 -0.25 -5.44 15 3 O -0.21 -5.37 10.52 4.76 0.05 -5.32 15 4 C 0.05 1.36 7.36 -38.58 -0.28 1.08 15 5 C -0.14 -3.04 9.70 -39.42 -0.38 -3.42 15 6 C -0.08 -1.56 5.88 -104.60 -0.61 -2.17 15 7 C -0.10 -1.46 9.99 36.00 0.36 -1.10 15 8 C -0.18 -3.81 9.68 -39.56 -0.38 -4.20 15 9 C -0.02 -0.42 8.77 -39.40 -0.35 -0.76 15 10 C -0.12 -3.12 5.80 -104.92 -0.61 -3.72 15 11 C 0.06 1.72 5.75 -104.77 -0.60 1.11 15 12 C -0.46 -12.24 9.05 -37.98 -0.34 -12.59 15 13 H 0.08 2.06 7.91 -52.49 -0.42 1.64 15 14 C 0.08 2.01 4.96 -17.33 -0.09 1.92 15 15 N -0.80 -20.97 10.24 55.54 0.57 -20.40 15 16 Si 0.90 18.86 29.60 -169.99 -5.03 13.83 15 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 20 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.11 2.06 8.06 -52.49 -0.42 1.63 15 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.06 0.77 8.08 -51.92 -0.42 0.35 15 26 H 0.06 0.79 8.08 -51.93 -0.42 0.37 15 27 H 0.11 1.93 8.06 -52.48 -0.42 1.51 15 28 H 0.12 3.04 6.32 -52.49 -0.33 2.70 15 29 H 0.28 6.69 8.30 -40.82 -0.34 6.35 15 LS Contribution 253.56 15.07 3.82 3.82 Total: -1.00 -29.13 253.56 -7.03 -36.16 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -3.26 Total: 1.29 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: -3.18 Total: -29.39 kcal Atomic # 7 Polarization: -20.97 SS G_CDS: 0.57 Total: -20.40 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: 0.05 Total: -5.32 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.13 -7.03 -36.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260730435.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.183 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds