Wall clock time and date at job start Mon Mar 30 2020 02:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33943 * 125.33681 * 2 1 4 4 C 1.34983 * 111.57327 * 180.02562 * 3 2 1 5 5 C 1.38982 * 132.70821 * 180.02562 * 4 3 2 6 6 C 1.37915 * 120.01710 * 179.97438 * 5 4 3 7 7 C 1.50694 * 119.67557 * 180.02562 * 6 5 4 8 8 C 1.38614 * 120.64554 * 0.02562 * 6 5 4 9 9 C 1.37928 * 120.15505 * 0.25852 * 8 6 5 10 10 C 1.39046 * 119.65071 * 359.47147 * 9 8 6 11 11 C 1.38652 * 125.33791 * 180.02562 * 2 1 3 12 12 C 1.40950 * 127.31036 * 359.97438 * 11 2 1 13 13 H 1.07997 * 120.00135 * 30.12055 * 12 11 2 14 14 C 1.39783 * 119.99816 * 210.11580 * 12 11 2 15 15 N 1.31005 * 119.99942 * 19.06867 * 14 12 11 16 16 Si 1.86802 * 120.00139 * 199.06345 * 14 12 11 17 17 H 1.48497 * 109.46905 * 60.00146 * 16 14 12 18 18 H 1.48499 * 109.47280 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46782 * 300.00317 * 16 14 12 20 20 H 1.09002 * 109.46827 * 356.20256 * 1 2 3 21 21 H 1.08999 * 109.46911 * 116.19842 * 1 2 3 22 22 H 1.08995 * 109.46996 * 236.20303 * 1 2 3 23 23 H 1.08001 * 119.99138 * 359.97438 * 5 4 3 24 24 H 1.08997 * 109.47205 * 269.97625 * 7 6 5 25 25 H 1.09009 * 109.47404 * 29.97288 * 7 6 5 26 26 H 1.09002 * 109.47252 * 149.97260 * 7 6 5 27 27 H 1.08009 * 119.92144 * 179.97438 * 8 6 5 28 28 H 1.08000 * 120.17965 * 179.74920 * 9 8 6 29 29 H 0.97003 * 120.00061 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2817 1.0927 0.0000 4 6 3.5928 0.7715 -0.0006 5 6 4.7513 1.5392 -0.0003 6 6 5.9861 0.9248 -0.0005 7 6 7.2373 1.7646 0.0003 8 6 6.0874 -0.4576 -0.0015 9 6 4.9486 -1.2358 -0.0077 10 6 3.6989 -0.6263 -0.0017 11 6 2.3089 -1.1311 -0.0005 12 6 1.8886 -2.4764 -0.0006 13 1 0.9552 -2.7505 -0.4697 14 6 2.6799 -3.4559 0.6063 15 7 3.5930 -3.1115 1.4803 16 14 2.4353 -5.2560 0.1713 17 1 2.6743 -5.4511 -1.2812 18 1 3.3911 -6.0870 0.9467 19 1 1.0456 -5.6610 0.5032 20 1 -0.3633 1.0254 0.0681 21 1 -0.3633 -0.4537 -0.9221 22 1 -0.3633 -0.5716 0.8540 23 1 4.6847 2.6171 0.0000 24 1 7.5394 1.9675 -1.0271 25 1 7.0428 2.7060 0.5144 26 1 8.0348 1.2280 0.5143 27 1 7.0604 -0.9266 -0.0021 28 1 5.0271 -2.3130 -0.0125 29 1 4.1419 -3.7912 1.9018 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260730435.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:04 Heat of formation + Delta-G solvation = -11.702932 kcal Electronic energy + Delta-G solvation = -14015.198794 eV Core-core repulsion = 11675.105414 eV Total energy + Delta-G solvation = -2340.093380 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.50970 -38.73918 -36.01122 -33.27943 -32.74232 -31.08497 -29.57425 -27.57444 -25.40010 -23.57670 -22.07500 -20.88336 -18.85008 -17.62894 -16.93129 -16.65377 -16.41792 -15.71012 -14.89253 -14.37374 -14.31943 -14.26449 -13.79716 -13.57889 -13.35980 -12.97130 -12.79825 -12.76666 -12.49615 -12.26320 -12.08355 -11.90162 -11.34757 -10.99366 -10.18364 -9.17504 -8.77084 -8.38178 -6.23301 0.35408 0.72128 1.32894 1.39496 1.50142 1.93550 2.23955 2.43412 2.94231 3.33048 4.06965 4.14120 4.24938 4.46479 4.58924 4.74022 4.75433 4.88204 4.91640 4.93945 5.03607 5.10618 5.24238 5.30513 5.37445 5.63513 5.78291 5.84564 5.97412 6.21423 6.33037 6.78202 6.88781 7.07272 8.43309 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.027380 B = 0.012067 C = 0.008663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.404593 B = 2319.730267 C = 3231.330204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 C -0.219 4.219 3 O -0.219 6.219 4 C 0.023 3.977 5 C -0.146 4.146 6 C -0.068 4.068 7 C -0.098 4.098 8 C -0.175 4.175 9 C -0.043 4.043 10 C -0.155 4.155 11 C 0.019 3.981 12 C -0.489 4.489 13 H 0.079 0.921 14 C 0.039 3.961 15 N -0.831 5.831 16 Si 0.978 3.022 17 H -0.264 1.264 18 H -0.269 1.269 19 H -0.259 1.259 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.139 0.861 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.143 0.857 28 H 0.109 0.891 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 2.970 -2.079 5.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.265 4.265 3 O -0.124 6.124 4 C -0.025 4.025 5 C -0.165 4.165 6 C -0.068 4.068 7 C -0.154 4.154 8 C -0.193 4.193 9 C -0.061 4.061 10 C -0.156 4.156 11 C 0.016 3.984 12 C -0.520 4.520 13 H 0.097 0.903 14 C -0.174 4.174 15 N -0.458 5.458 16 Si 0.799 3.201 17 H -0.188 1.188 18 H -0.193 1.193 19 H -0.183 1.183 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.157 0.843 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.161 0.839 28 H 0.127 0.873 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.684 3.154 -1.909 5.961 hybrid contribution -0.336 -1.046 0.042 1.099 sum 4.348 2.108 -1.867 5.180 Atomic orbital electron populations 1.19665 0.84229 1.01811 1.01691 1.22966 0.93980 0.82717 1.26848 1.83426 1.14473 1.35429 1.79036 1.20157 0.84310 0.94476 1.03555 1.19919 0.87804 0.99318 1.09425 1.19915 0.94717 0.93946 0.98268 1.20753 0.92527 0.98731 1.03383 1.21108 0.97945 0.93579 1.06677 1.20726 0.90789 0.99623 0.94974 1.20327 0.95616 0.93106 1.06571 1.18987 0.89035 0.93987 0.96342 1.18783 1.07459 0.90751 1.34986 0.90294 1.26597 0.93282 1.05357 0.92178 1.70022 1.18576 1.37732 1.19520 0.85322 0.79403 0.76094 0.79273 1.18845 1.19324 1.18348 0.91136 0.91535 0.91909 0.84276 0.89753 0.90474 0.90152 0.83949 0.87262 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.73 10.15 71.24 0.72 -0.01 15 2 C -0.22 -11.71 7.41 25.78 0.19 -11.52 15 3 O -0.22 -11.68 10.52 -5.87 -0.06 -11.74 15 4 C 0.02 1.19 7.36 22.92 0.17 1.36 15 5 C -0.15 -6.06 9.70 22.37 0.22 -5.84 15 6 C -0.07 -2.47 5.88 -19.85 -0.12 -2.59 15 7 C -0.10 -2.34 9.99 71.23 0.71 -1.62 15 8 C -0.17 -6.99 9.68 22.29 0.22 -6.77 15 9 C -0.04 -2.13 8.77 22.39 0.20 -1.93 15 10 C -0.15 -8.55 5.80 -20.06 -0.12 -8.66 15 11 C 0.02 1.09 5.75 -19.96 -0.11 0.98 15 12 C -0.49 -27.33 9.05 23.31 0.21 -27.12 15 13 H 0.08 4.22 7.91 -2.91 -0.02 4.20 15 14 C 0.04 2.05 4.96 85.19 0.42 2.47 15 15 N -0.83 -44.62 10.24 21.81 0.22 -44.40 15 16 Si 0.98 39.22 29.60 68.60 2.03 41.25 15 17 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 18 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 20 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 21 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 22 H 0.06 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.14 4.83 8.06 -2.91 -0.02 4.81 15 24 H 0.08 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.08 1.62 8.08 -2.38 -0.02 1.60 15 26 H 0.08 1.66 8.08 -2.39 -0.02 1.65 15 27 H 0.14 4.62 8.06 -2.91 -0.02 4.60 15 28 H 0.11 5.59 6.32 -2.91 -0.02 5.57 15 29 H 0.28 13.89 8.30 -92.71 -0.77 13.12 15 Total: -1.00 -65.82 253.56 6.05 -59.77 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 1.15 Total: 16.38 kcal Atomic # 6 Polarization: -63.97 SS G_CDS: 2.71 Total: -61.26 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.22 Total: -44.40 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.06 Total: -11.74 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -65.82 6.05 -59.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260730435.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.071 kcal (2) G-P(sol) polarization free energy of solvation -65.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds