Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47042 * 2 1 4 4 C 1.50699 * 109.47353 * 239.99260 * 2 1 3 5 5 H 1.08001 * 119.99845 * 240.00128 * 4 2 1 6 6 C 1.37875 * 120.00069 * 59.99910 * 4 2 1 7 7 N 1.31527 * 119.99663 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00333 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47154 * 60.00046 * 8 6 4 10 10 H 1.48494 * 109.47262 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46893 * 300.00237 * 8 6 4 12 12 C 1.53002 * 109.47111 * 119.99271 * 2 1 3 13 13 H 1.09003 * 109.30931 * 59.75445 * 12 2 1 14 14 C 1.52583 * 109.39063 * 300.00464 * 12 2 1 15 15 C 1.52582 * 110.72773 * 169.17577 * 14 12 2 16 16 C 1.53101 * 109.87662 * 70.72388 * 15 14 12 17 17 S 1.81761 * 108.83112 * 296.84405 * 16 15 14 18 18 O 1.42096 * 109.54178 * 297.40820 * 17 16 15 19 19 C 1.53094 * 109.39070 * 179.50898 * 12 2 1 20 20 H 1.08999 * 109.47334 * 300.00235 * 1 2 3 21 21 H 1.09002 * 109.46911 * 60.00972 * 1 2 3 22 22 H 1.09006 * 109.46737 * 180.02562 * 1 2 3 23 23 H 0.96999 * 119.99263 * 179.97438 * 7 6 4 24 24 H 1.08999 * 109.22660 * 48.85410 * 14 12 2 25 25 H 1.09004 * 109.22168 * 289.49536 * 14 12 2 26 26 H 1.09002 * 109.39091 * 190.82299 * 15 14 12 27 27 H 1.08996 * 109.39211 * 310.62384 * 15 14 12 28 28 H 1.08994 * 109.57919 * 56.73075 * 16 15 14 29 29 H 1.09003 * 109.57483 * 177.12310 * 16 15 14 30 30 H 1.09004 * 109.57464 * 302.98056 * 19 12 2 31 31 H 1.08994 * 109.57767 * 63.36496 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2397 -2.4827 7 7 0.9436 0.8299 -2.6035 8 14 2.3214 -1.1208 -4.0077 9 1 1.8259 -2.5206 -4.0074 10 1 1.8271 -0.4205 -5.2203 11 1 3.8065 -1.1214 -4.0079 12 6 2.0400 -0.7211 1.2494 13 1 1.6716 -1.7470 1.2490 14 6 1.5303 -0.0003 2.4939 15 6 1.7912 -0.8333 3.7453 16 6 3.2908 -0.8550 4.0529 17 16 4.1595 -1.6714 2.6808 18 8 3.7224 -3.0195 2.5766 19 6 3.5709 -0.7308 1.2413 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 0.7096 1.1614 -3.4845 24 1 0.4587 0.1727 2.3948 25 1 2.0408 0.9582 2.5878 26 1 1.2551 -0.3975 4.5884 27 1 1.4407 -1.8523 3.5814 28 1 3.6561 0.1661 4.1619 29 1 3.4665 -1.4082 4.9755 30 1 3.9283 -1.2023 0.3259 31 1 3.9429 0.2923 1.2966 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260758617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = -60.188504 kcal Electronic energy + Delta-G solvation = -13275.483978 eV Core-core repulsion = 11068.732057 eV Total energy + Delta-G solvation = -2206.751921 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.33977 -35.15593 -33.74805 -31.48781 -28.77649 -26.85061 -24.82287 -22.69269 -20.90688 -18.98877 -17.13159 -16.23673 -15.45152 -14.80859 -14.40861 -14.08831 -13.47457 -13.15054 -12.85764 -12.55068 -12.34760 -11.52589 -11.35397 -11.31939 -10.94665 -10.79057 -10.56528 -10.35662 -10.20025 -10.16256 -9.82984 -9.65540 -8.93682 -8.68722 -8.30160 -7.67852 -5.96442 -4.02139 2.10904 3.00586 3.32607 3.37121 3.40744 4.23775 4.45012 5.10452 5.14067 5.33286 5.39767 5.58659 5.73064 5.91117 6.00356 6.07762 6.28600 6.41026 6.44039 6.76420 6.84046 6.93613 7.05387 7.21932 7.37674 7.74692 8.00337 8.16690 8.48673 9.00639 9.62215 11.09353 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.040059 B = 0.009692 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.802007 B = 2888.238137 C = 3374.003783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 H 0.027 0.973 4 C -0.509 4.509 5 H 0.054 0.946 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 C -0.074 4.074 13 H 0.058 0.942 14 C -0.133 4.133 15 C -0.115 4.115 16 C -0.438 4.438 17 S 1.206 4.794 18 O -0.860 6.860 19 C -0.407 4.407 20 H 0.010 0.990 21 H 0.081 0.919 22 H 0.022 0.978 23 H 0.259 0.741 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 0.931 10.921 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.035 3.965 3 H 0.045 0.955 4 C -0.547 4.547 5 H 0.072 0.928 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.093 4.093 13 H 0.077 0.923 14 C -0.170 4.170 15 C -0.153 4.153 16 C -0.575 4.575 17 S 1.406 4.594 18 O -0.855 6.855 19 C -0.546 4.546 20 H 0.029 0.971 21 H 0.100 0.900 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.366 0.244 10.842 13.110 hybrid contribution -1.981 -0.478 -1.135 2.332 sum 5.385 -0.233 9.707 11.103 Atomic orbital electron populations 1.21901 0.99111 0.98823 0.99995 1.18640 0.92171 0.95503 0.90178 0.95506 1.21163 1.30844 1.12057 0.90611 0.92797 1.24958 0.95188 0.95018 0.98892 1.69884 1.36926 1.23010 1.23259 0.86722 0.79230 0.79874 0.82581 1.20392 1.21335 1.20244 1.21091 0.91802 1.00014 0.96376 0.92333 1.21809 1.02793 0.98815 0.93565 1.21424 0.94028 1.01104 0.98782 1.27622 1.05155 1.10348 1.14366 1.69672 1.15222 0.85431 0.89062 1.93098 1.81997 1.26099 1.84352 1.27544 1.03696 1.10087 1.13297 0.97125 0.89987 0.95876 0.93085 0.90793 0.91871 0.92283 0.92087 0.86997 0.88533 0.86324 0.87242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.64 37.16 0.32 -3.15 16 2 C 0.05 1.35 1.89 -91.77 -0.17 1.18 16 3 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.51 -13.98 7.79 -34.44 -0.27 -14.25 16 5 H 0.05 1.48 6.68 -52.49 -0.35 1.13 16 6 C 0.06 1.68 5.30 -17.81 -0.09 1.59 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 8 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C -0.07 -1.52 1.59 -90.78 -0.14 -1.67 16 13 H 0.06 1.37 8.06 -51.93 -0.42 0.96 16 14 C -0.13 -2.29 4.82 -27.16 -0.13 -2.42 16 15 C -0.12 -1.76 5.76 -26.89 -0.15 -1.92 16 16 C -0.44 -5.37 6.43 37.21 0.24 -5.13 16 17 S 1.21 16.64 13.75 -107.50 -1.48 15.16 16 18 O -0.86 -17.86 18.14 -35.23 -0.64 -18.49 16 19 C -0.41 -7.03 5.50 37.21 0.20 -6.83 16 20 H 0.01 0.22 6.19 -51.93 -0.32 -0.10 16 21 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 22 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.07 1.33 5.87 -51.93 -0.30 1.03 16 25 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 28 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.12 2.29 6.50 -51.93 -0.34 1.96 16 31 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 254.46 15.07 3.83 3.83 Total: -1.00 -34.07 254.46 -7.43 -41.51 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.56 Total: -0.95 kcal Atomic # 6 Polarization: -32.41 SS G_CDS: -0.20 Total: -32.61 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.63 Total: -25.04 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.64 Total: -18.49 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 16.64 SS G_CDS: -1.48 Total: 15.16 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.07 -7.43 -41.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260758617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.682 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds