Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47042 * 2 1 4 4 C 1.50699 * 109.47353 * 239.99260 * 2 1 3 5 5 H 1.08001 * 119.99845 * 240.00128 * 4 2 1 6 6 C 1.37875 * 120.00069 * 59.99910 * 4 2 1 7 7 N 1.31527 * 119.99663 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00333 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47154 * 60.00046 * 8 6 4 10 10 H 1.48494 * 109.47262 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46893 * 300.00237 * 8 6 4 12 12 C 1.53002 * 109.47111 * 119.99271 * 2 1 3 13 13 H 1.09003 * 109.30931 * 59.75445 * 12 2 1 14 14 C 1.52583 * 109.39063 * 300.00464 * 12 2 1 15 15 C 1.52582 * 110.72773 * 169.17577 * 14 12 2 16 16 C 1.53101 * 109.87662 * 70.72388 * 15 14 12 17 17 S 1.81761 * 108.83112 * 296.84405 * 16 15 14 18 18 O 1.42096 * 109.54178 * 297.40820 * 17 16 15 19 19 C 1.53094 * 109.39070 * 179.50898 * 12 2 1 20 20 H 1.08999 * 109.47334 * 300.00235 * 1 2 3 21 21 H 1.09002 * 109.46911 * 60.00972 * 1 2 3 22 22 H 1.09006 * 109.46737 * 180.02562 * 1 2 3 23 23 H 0.96999 * 119.99263 * 179.97438 * 7 6 4 24 24 H 1.08999 * 109.22660 * 48.85410 * 14 12 2 25 25 H 1.09004 * 109.22168 * 289.49536 * 14 12 2 26 26 H 1.09002 * 109.39091 * 190.82299 * 15 14 12 27 27 H 1.08996 * 109.39211 * 310.62384 * 15 14 12 28 28 H 1.08994 * 109.57919 * 56.73075 * 16 15 14 29 29 H 1.09003 * 109.57483 * 177.12310 * 16 15 14 30 30 H 1.09004 * 109.57464 * 302.98056 * 19 12 2 31 31 H 1.08994 * 109.57767 * 63.36496 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2397 -2.4827 7 7 0.9436 0.8299 -2.6035 8 14 2.3214 -1.1208 -4.0077 9 1 1.8259 -2.5206 -4.0074 10 1 1.8271 -0.4205 -5.2203 11 1 3.8065 -1.1214 -4.0079 12 6 2.0400 -0.7211 1.2494 13 1 1.6716 -1.7470 1.2490 14 6 1.5303 -0.0003 2.4939 15 6 1.7912 -0.8333 3.7453 16 6 3.2908 -0.8550 4.0529 17 16 4.1595 -1.6714 2.6808 18 8 3.7224 -3.0195 2.5766 19 6 3.5709 -0.7308 1.2413 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 0.7096 1.1614 -3.4845 24 1 0.4587 0.1727 2.3948 25 1 2.0408 0.9582 2.5878 26 1 1.2551 -0.3975 4.5884 27 1 1.4407 -1.8523 3.5814 28 1 3.6561 0.1661 4.1619 29 1 3.4665 -1.4082 4.9755 30 1 3.9283 -1.2023 0.3259 31 1 3.9429 0.2923 1.2966 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260758617.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = -84.066330 kcal Electronic energy + Delta-G solvation = -13276.519399 eV Core-core repulsion = 11068.732057 eV Total energy + Delta-G solvation = -2207.787341 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.93247 -36.62858 -35.50457 -33.24328 -30.49892 -28.29882 -26.76882 -24.26341 -22.43603 -20.68824 -18.42136 -18.29107 -16.97900 -16.31685 -16.01429 -15.53189 -15.02007 -14.60822 -14.50861 -14.06779 -13.85632 -13.39287 -13.03738 -12.85729 -12.64058 -12.46708 -12.29281 -12.07869 -11.93498 -11.78722 -11.52628 -11.39597 -10.74225 -10.51398 -10.33793 -8.98711 -8.10539 -6.22646 0.95093 1.36655 1.38263 1.45612 1.83486 2.40329 3.03088 3.16833 3.88070 3.92089 4.09082 4.19548 4.41265 4.60569 4.69482 4.79494 4.89138 4.92719 5.02381 5.12344 5.18801 5.28304 5.34628 5.43349 5.50943 5.60796 5.97214 6.10894 6.39158 6.87317 7.44492 8.93698 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.040059 B = 0.009692 C = 0.008297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.802007 B = 2888.238137 C = 3374.003783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.051 3.949 3 H 0.012 0.988 4 C -0.525 4.525 5 H 0.044 0.956 6 C 0.013 3.987 7 N -0.916 5.916 8 Si 0.945 3.055 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.266 1.266 12 C -0.071 4.071 13 H 0.018 0.982 14 C -0.129 4.129 15 C -0.116 4.116 16 C -0.431 4.431 17 S 1.285 4.715 18 O -0.931 6.931 19 C -0.420 4.420 20 H 0.038 0.962 21 H 0.055 0.945 22 H 0.009 0.991 23 H 0.260 0.740 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.028 0.972 28 H 0.158 0.842 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 1.877 12.649 15.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.032 3.968 3 H 0.030 0.970 4 C -0.563 4.563 5 H 0.062 0.938 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.771 3.229 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.190 1.190 12 C -0.091 4.091 13 H 0.036 0.964 14 C -0.166 4.166 15 C -0.155 4.155 16 C -0.570 4.570 17 S 1.486 4.514 18 O -0.927 6.927 19 C -0.558 4.558 20 H 0.057 0.943 21 H 0.074 0.926 22 H 0.028 0.972 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.176 0.824 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.664 1.183 12.544 15.291 hybrid contribution -2.430 -0.736 -1.586 2.993 sum 6.234 0.447 10.958 12.615 Atomic orbital electron populations 1.21786 0.99441 0.97858 1.00045 1.18623 0.91984 0.94756 0.91459 0.96957 1.21478 1.30748 1.11907 0.92151 0.93820 1.25670 0.95486 0.95776 1.01614 1.69998 1.37721 1.24060 1.23806 0.85815 0.79272 0.78413 0.79418 1.20817 1.20618 1.19046 1.20956 0.94315 0.97417 0.96376 0.96389 1.21759 1.02215 0.99894 0.92742 1.21409 0.96527 0.98987 0.98529 1.27624 1.02547 1.13069 1.13714 1.68890 1.13320 0.82168 0.86999 1.92962 1.83406 1.31029 1.85329 1.27653 1.01051 1.12548 1.14509 0.94320 0.92626 0.97216 0.93071 0.91996 0.89178 0.89511 0.95264 0.82435 0.86162 0.89129 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 8.64 71.98 0.62 -6.12 16 2 C 0.05 2.58 1.89 -11.54 -0.02 2.56 16 3 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 4 C -0.52 -29.60 7.79 25.60 0.20 -29.40 16 5 H 0.04 2.49 6.68 -2.91 -0.02 2.47 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.57 11.32 21.45 0.24 -53.33 16 8 Si 0.94 44.86 29.54 68.60 2.03 46.89 16 9 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 C -0.07 -2.96 1.59 -10.90 -0.02 -2.98 16 13 H 0.02 0.86 8.06 -2.39 -0.02 0.85 16 14 C -0.13 -4.18 4.82 30.32 0.15 -4.04 16 15 C -0.12 -3.20 5.76 30.49 0.18 -3.02 16 16 C -0.43 -8.51 6.43 72.02 0.46 -8.04 16 17 S 1.29 32.77 13.75 -56.49 -0.78 32.00 16 18 O -0.93 -38.54 18.14 -148.98 -2.70 -41.24 16 19 C -0.42 -14.14 5.50 72.01 0.40 -13.74 16 20 H 0.04 1.68 6.19 -2.39 -0.01 1.66 16 21 H 0.05 3.09 6.07 -2.39 -0.01 3.08 16 22 H 0.01 0.45 8.14 -2.38 -0.02 0.44 16 23 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.06 2.14 5.87 -2.39 -0.01 2.12 16 25 H 0.09 2.46 8.08 -2.39 -0.02 2.44 16 26 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 28 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 3.57 6.50 -2.39 -0.02 3.56 16 31 H 0.14 3.75 8.14 -2.39 -0.02 3.73 16 Total: -1.00 -76.52 254.46 2.30 -74.22 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.10 Total: 5.08 kcal Atomic # 6 Polarization: -66.03 SS G_CDS: 2.41 Total: -63.62 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.24 Total: -53.33 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -2.70 Total: -41.24 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 32.77 SS G_CDS: -0.78 Total: 32.00 kcal Total: -76.52 2.30 -74.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260758617.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.844 kcal (2) G-P(sol) polarization free energy of solvation -76.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds