Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47175 * 2 1 4 4 C 1.50701 * 109.47202 * 239.99996 * 2 1 3 5 5 H 1.08001 * 120.00255 * 245.35943 * 4 2 1 6 6 C 1.37874 * 119.99961 * 65.35906 * 4 2 1 7 7 N 1.31518 * 120.00327 * 187.14772 * 6 4 2 8 8 Si 1.86800 * 120.00146 * 7.14877 * 6 4 2 9 9 H 1.48498 * 109.47185 * 270.00132 * 8 6 4 10 10 H 1.48498 * 109.47268 * 150.00099 * 8 6 4 11 11 H 1.48502 * 109.47163 * 30.00289 * 8 6 4 12 12 C 1.53004 * 109.47277 * 119.99872 * 2 1 3 13 13 H 1.08995 * 109.38425 * 60.00140 * 12 2 1 14 14 C 1.52580 * 109.38827 * 300.20066 * 12 2 1 15 15 C 1.52577 * 110.72515 * 169.17490 * 14 12 2 16 16 C 1.53096 * 109.95573 * 70.67461 * 15 14 12 17 17 S 1.81744 * 108.84204 * 296.97275 * 16 15 14 18 18 O 1.42094 * 109.47522 * 169.26106 * 17 16 15 19 19 C 1.53099 * 109.39049 * 179.80066 * 12 2 1 20 20 H 1.09000 * 109.47367 * 186.50189 * 1 2 3 21 21 H 1.09001 * 109.46977 * 306.50467 * 1 2 3 22 22 H 1.09003 * 109.47335 * 66.50385 * 1 2 3 23 23 H 0.97006 * 119.99126 * 354.92016 * 7 6 4 24 24 H 1.09004 * 109.22112 * 289.49365 * 14 12 2 25 25 H 1.08993 * 109.22711 * 48.89213 * 14 12 2 26 26 H 1.08999 * 109.39063 * 190.82244 * 15 14 12 27 27 H 1.09002 * 109.39335 * 310.52505 * 15 14 12 28 28 H 1.08999 * 109.57943 * 56.78564 * 16 15 14 29 29 H 1.09004 * 109.58010 * 177.16958 * 16 15 14 30 30 H 1.08994 * 109.57666 * 302.98192 * 19 12 2 31 31 H 1.09000 * 109.57434 * 63.36606 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5800 -1.6362 -1.1338 6 6 1.7928 -0.1785 -2.4797 7 7 2.1054 -0.8642 -3.5575 8 14 1.0241 1.5164 -2.6415 9 1 -0.4545 1.3871 -2.6861 10 1 1.5027 2.1597 -3.8914 11 1 1.4132 2.3497 -1.4755 12 6 2.0400 -0.7212 1.2493 13 1 1.6760 -1.7486 1.2479 14 6 1.5263 -0.0034 2.4938 15 6 1.7875 -0.8372 3.7446 16 6 3.2864 -0.8573 4.0555 17 16 4.1598 -1.6673 2.6829 18 8 5.5598 -1.4758 2.8334 19 6 3.5710 -0.7245 1.2449 20 1 -0.3634 -1.0210 0.1164 21 1 -0.3633 0.6114 0.8261 22 1 -0.3634 0.4097 -0.9425 23 1 2.5712 -1.7112 -3.4752 24 1 2.0340 0.9564 2.5897 25 1 0.4543 0.1661 2.3936 26 1 1.2489 -0.4040 4.5873 27 1 1.4385 -1.8566 3.5794 28 1 3.6499 0.1642 4.1676 29 1 3.4609 -1.4121 4.9774 30 1 3.9326 -1.1928 0.3295 31 1 3.9385 0.3000 1.3029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260758619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = -62.151731 kcal Electronic energy + Delta-G solvation = -13213.987950 eV Core-core repulsion = 11007.150897 eV Total energy + Delta-G solvation = -2206.837053 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.58903 -35.30564 -33.84002 -31.70192 -29.40191 -26.97585 -24.45716 -22.92227 -20.89135 -19.00112 -17.48360 -17.09596 -15.51188 -14.83946 -14.28219 -14.07850 -13.90093 -13.54414 -12.92881 -12.74241 -12.56985 -12.00558 -11.63308 -11.44115 -11.12491 -10.98298 -10.55083 -10.52672 -10.33195 -9.99384 -9.82283 -9.57622 -9.09610 -8.62781 -8.35731 -7.89468 -6.39285 -4.05069 1.92082 2.89944 3.36781 3.44361 3.59073 4.10234 4.49530 4.92520 5.06343 5.24996 5.33591 5.43843 5.57004 5.73375 5.86973 5.97829 6.10072 6.21520 6.27953 6.35023 6.48678 6.67086 6.71648 6.85735 6.90430 7.21335 7.53299 8.14355 8.38791 8.90965 9.64107 10.99823 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.040780 B = 0.009738 C = 0.008489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.443136 B = 2874.545837 C = 3297.683171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.014 3.986 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.059 0.941 6 C 0.024 3.976 7 N -0.917 5.917 8 Si 1.056 2.944 9 H -0.285 1.285 10 H -0.293 1.293 11 H -0.281 1.281 12 C -0.044 4.044 13 H 0.076 0.924 14 C -0.139 4.139 15 C -0.093 4.093 16 C -0.437 4.437 17 S 1.206 4.794 18 O -0.873 6.873 19 C -0.402 4.402 20 H 0.048 0.952 21 H 0.027 0.973 22 H 0.043 0.957 23 H 0.266 0.734 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.126 0.874 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -1.501 13.199 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.006 4.006 3 H 0.042 0.958 4 C -0.624 4.624 5 H 0.077 0.923 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.886 3.114 9 H -0.212 1.212 10 H -0.220 1.220 11 H -0.207 1.207 12 C -0.064 4.064 13 H 0.095 0.905 14 C -0.177 4.177 15 C -0.132 4.132 16 C -0.574 4.574 17 S 1.407 4.593 18 O -0.869 6.869 19 C -0.541 4.541 20 H 0.067 0.933 21 H 0.045 0.955 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.144 0.856 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.244 -1.177 12.164 12.644 hybrid contribution 1.138 1.204 1.203 2.048 sum -2.106 0.027 13.367 13.532 Atomic orbital electron populations 1.22200 0.99293 1.00137 0.98919 1.19193 0.91613 0.96345 0.93450 0.95764 1.22062 1.39157 1.09947 0.91202 0.92285 1.25743 0.96380 1.03575 0.92267 1.70822 1.38284 1.15602 1.30539 0.83827 0.76262 0.75939 0.75363 1.21175 1.21977 1.20715 1.20688 0.90409 1.00363 0.94958 0.90540 1.21869 1.02602 0.99028 0.94162 1.21135 0.92179 1.01541 0.98296 1.27581 1.05761 1.09478 1.14607 1.70120 0.88150 1.12857 0.88135 1.93049 1.25960 1.83846 1.84033 1.27518 1.03800 1.09603 1.13195 0.93332 0.95454 0.93807 0.92368 0.92697 0.90465 0.91891 0.90468 0.90217 0.87805 0.85593 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.25 37.16 0.31 -2.64 16 2 C 0.01 0.31 1.47 -91.77 -0.13 0.17 16 3 H 0.02 0.56 6.59 -51.93 -0.34 0.22 16 4 C -0.59 -15.37 8.02 -34.44 -0.28 -15.65 16 5 H 0.06 1.62 7.16 -52.49 -0.38 1.25 16 6 C 0.02 0.68 5.42 -17.82 -0.10 0.58 16 7 N -0.92 -27.79 13.70 55.43 0.76 -27.03 16 8 Si 1.06 25.39 25.42 -169.99 -4.32 21.07 16 9 H -0.28 -6.49 6.75 56.52 0.38 -6.11 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.28 -6.36 6.36 56.52 0.36 -6.00 16 12 C -0.04 -0.77 1.58 -90.78 -0.14 -0.91 16 13 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 14 C -0.14 -1.97 4.82 -27.16 -0.13 -2.10 16 15 C -0.09 -1.04 5.75 -26.90 -0.15 -1.19 16 16 C -0.44 -5.34 6.44 37.21 0.24 -5.10 16 17 S 1.21 17.31 13.75 -107.50 -1.48 15.84 16 18 O -0.87 -18.05 18.14 -35.23 -0.64 -18.69 16 19 C -0.40 -7.10 5.51 37.21 0.20 -6.90 16 20 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.03 0.46 6.54 -51.93 -0.34 0.12 16 22 H 0.04 0.93 4.53 -51.93 -0.24 0.70 16 23 H 0.27 7.99 8.72 -40.82 -0.36 7.64 16 24 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 25 H 0.08 1.05 6.00 -51.93 -0.31 0.74 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.13 2.50 6.63 -51.93 -0.34 2.15 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 249.54 15.07 3.76 3.76 Total: -1.00 -33.68 249.54 -6.64 -40.32 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.53 Total: -1.53 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: -0.19 Total: -33.74 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: 0.76 Total: -27.03 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.64 Total: -18.69 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -4.32 Total: 21.07 kcal Atomic # 16 Polarization: 17.31 SS G_CDS: -1.48 Total: 15.84 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.68 -6.64 -40.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260758619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.831 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds