Wall clock time and date at job start Mon Mar 30 2020 02:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47175 * 2 1 4 4 C 1.50701 * 109.47202 * 239.99996 * 2 1 3 5 5 H 1.08001 * 120.00255 * 245.35943 * 4 2 1 6 6 C 1.37874 * 119.99961 * 65.35906 * 4 2 1 7 7 N 1.31518 * 120.00327 * 187.14772 * 6 4 2 8 8 Si 1.86800 * 120.00146 * 7.14877 * 6 4 2 9 9 H 1.48498 * 109.47185 * 270.00132 * 8 6 4 10 10 H 1.48498 * 109.47268 * 150.00099 * 8 6 4 11 11 H 1.48502 * 109.47163 * 30.00289 * 8 6 4 12 12 C 1.53004 * 109.47277 * 119.99872 * 2 1 3 13 13 H 1.08995 * 109.38425 * 60.00140 * 12 2 1 14 14 C 1.52580 * 109.38827 * 300.20066 * 12 2 1 15 15 C 1.52577 * 110.72515 * 169.17490 * 14 12 2 16 16 C 1.53096 * 109.95573 * 70.67461 * 15 14 12 17 17 S 1.81744 * 108.84204 * 296.97275 * 16 15 14 18 18 O 1.42094 * 109.47522 * 169.26106 * 17 16 15 19 19 C 1.53099 * 109.39049 * 179.80066 * 12 2 1 20 20 H 1.09000 * 109.47367 * 186.50189 * 1 2 3 21 21 H 1.09001 * 109.46977 * 306.50467 * 1 2 3 22 22 H 1.09003 * 109.47335 * 66.50385 * 1 2 3 23 23 H 0.97006 * 119.99126 * 354.92016 * 7 6 4 24 24 H 1.09004 * 109.22112 * 289.49365 * 14 12 2 25 25 H 1.08993 * 109.22711 * 48.89213 * 14 12 2 26 26 H 1.08999 * 109.39063 * 190.82244 * 15 14 12 27 27 H 1.09002 * 109.39335 * 310.52505 * 15 14 12 28 28 H 1.08999 * 109.57943 * 56.78564 * 16 15 14 29 29 H 1.09004 * 109.58010 * 177.16958 * 16 15 14 30 30 H 1.08994 * 109.57666 * 302.98192 * 19 12 2 31 31 H 1.09000 * 109.57434 * 63.36606 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5800 -1.6362 -1.1338 6 6 1.7928 -0.1785 -2.4797 7 7 2.1054 -0.8642 -3.5575 8 14 1.0241 1.5164 -2.6415 9 1 -0.4545 1.3871 -2.6861 10 1 1.5027 2.1597 -3.8914 11 1 1.4132 2.3497 -1.4755 12 6 2.0400 -0.7212 1.2493 13 1 1.6760 -1.7486 1.2479 14 6 1.5263 -0.0034 2.4938 15 6 1.7875 -0.8372 3.7446 16 6 3.2864 -0.8573 4.0555 17 16 4.1598 -1.6673 2.6829 18 8 5.5598 -1.4758 2.8334 19 6 3.5710 -0.7245 1.2449 20 1 -0.3634 -1.0210 0.1164 21 1 -0.3633 0.6114 0.8261 22 1 -0.3634 0.4097 -0.9425 23 1 2.5712 -1.7112 -3.4752 24 1 2.0340 0.9564 2.5897 25 1 0.4543 0.1661 2.3936 26 1 1.2489 -0.4040 4.5873 27 1 1.4385 -1.8566 3.5794 28 1 3.6499 0.1642 4.1676 29 1 3.4609 -1.4121 4.9774 30 1 3.9326 -1.1928 0.3295 31 1 3.9385 0.3000 1.3029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260758619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:27 Heat of formation + Delta-G solvation = -86.987275 kcal Electronic energy + Delta-G solvation = -13215.064900 eV Core-core repulsion = 11007.150897 eV Total energy + Delta-G solvation = -2207.914003 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97224 -36.80588 -35.41866 -33.46591 -30.90666 -28.25145 -26.28652 -24.28968 -22.19664 -20.55536 -19.51082 -18.35899 -16.84617 -16.09494 -15.88711 -15.46253 -15.35407 -15.01334 -14.51490 -14.25159 -13.79908 -13.70594 -13.14124 -13.01973 -12.60052 -12.30333 -12.15699 -11.92878 -11.68652 -11.57152 -11.34652 -11.24104 -10.66630 -10.51751 -10.36704 -9.19442 -8.60307 -6.25831 0.70567 1.42394 1.52706 1.68092 1.69023 2.50753 2.84459 3.18785 3.89770 3.99764 4.04450 4.22633 4.38076 4.47545 4.70383 4.79485 4.85037 4.92066 5.07407 5.10259 5.18262 5.28905 5.32618 5.44561 5.49863 5.64439 5.89192 6.14683 6.21808 6.70946 7.51121 8.77319 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.040780 B = 0.009738 C = 0.008489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.443136 B = 2874.545837 C = 3297.683171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.005 3.995 3 H 0.010 0.990 4 C -0.573 4.573 5 H 0.032 0.968 6 C -0.035 4.035 7 N -0.958 5.958 8 Si 1.089 2.911 9 H -0.261 1.261 10 H -0.303 1.303 11 H -0.260 1.260 12 C -0.044 4.044 13 H 0.094 0.906 14 C -0.137 4.137 15 C -0.089 4.089 16 C -0.427 4.427 17 S 1.267 4.733 18 O -0.937 6.937 19 C -0.412 4.412 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.026 0.974 23 H 0.251 0.749 24 H 0.044 0.956 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 -1.129 16.365 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 H 0.028 0.972 4 C -0.612 4.612 5 H 0.050 0.950 6 C -0.231 4.231 7 N -0.597 5.597 8 Si 0.914 3.086 9 H -0.186 1.186 10 H -0.231 1.231 11 H -0.185 1.185 12 C -0.063 4.063 13 H 0.112 0.888 14 C -0.174 4.174 15 C -0.127 4.127 16 C -0.567 4.567 17 S 1.470 4.530 18 O -0.933 6.933 19 C -0.550 4.550 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.126 0.874 28 H 0.087 0.913 29 H 0.155 0.845 30 H 0.109 0.891 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.337 -0.813 15.327 16.250 hybrid contribution 1.819 1.052 0.332 2.128 sum -3.518 0.239 15.659 16.051 Atomic orbital electron populations 1.22110 0.97026 1.01540 0.99629 1.19245 0.93448 0.95328 0.93502 0.97198 1.22422 1.36895 1.08713 0.93151 0.95009 1.27028 0.97157 1.06360 0.92526 1.70945 1.41117 1.15821 1.31804 0.83421 0.77096 0.72536 0.75579 1.18607 1.23103 1.18455 1.20688 0.89585 1.01297 0.94744 0.88756 1.21841 1.03108 0.98674 0.93772 1.21207 0.91052 1.03012 0.97466 1.27511 1.06212 1.08957 1.13980 1.69390 0.85538 1.11184 0.86916 1.92930 1.30223 1.84994 1.85123 1.27565 1.04823 1.08471 1.14161 0.92364 0.91580 0.95527 0.94021 0.93754 0.88936 0.89001 0.87420 0.91287 0.84509 0.89071 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.34 8.25 71.98 0.59 -4.75 16 2 C 0.00 0.21 1.47 -11.54 -0.02 0.19 16 3 H 0.01 0.45 6.59 -2.39 -0.02 0.43 16 4 C -0.57 -30.78 8.02 25.60 0.21 -30.58 16 5 H 0.03 1.83 7.16 -2.91 -0.02 1.81 16 6 C -0.03 -2.01 5.42 84.65 0.46 -1.56 16 7 N -0.96 -60.46 13.70 21.45 0.29 -60.16 16 8 Si 1.09 51.24 25.42 68.60 1.74 52.98 16 9 H -0.26 -11.18 6.75 99.48 0.67 -10.51 16 10 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 11 H -0.26 -11.17 6.36 99.48 0.63 -10.54 16 12 C -0.04 -1.42 1.58 -10.90 -0.02 -1.44 16 13 H 0.09 2.72 8.06 -2.39 -0.02 2.70 16 14 C -0.14 -3.30 4.82 30.31 0.15 -3.16 16 15 C -0.09 -1.47 5.75 30.49 0.18 -1.30 16 16 C -0.43 -8.59 6.44 72.01 0.46 -8.13 16 17 S 1.27 34.54 13.75 -56.49 -0.78 33.77 16 18 O -0.94 -38.60 18.14 -148.98 -2.70 -41.31 16 19 C -0.41 -14.70 5.51 72.02 0.40 -14.31 16 20 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.07 1.91 6.54 -2.39 -0.02 1.90 16 22 H 0.03 1.05 4.53 -2.39 -0.01 1.04 16 23 H 0.25 15.95 8.72 -92.70 -0.81 15.14 16 24 H 0.04 1.17 8.08 -2.39 -0.02 1.15 16 25 H 0.09 2.00 6.00 -2.39 -0.01 1.98 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.11 1.23 8.06 -2.39 -0.02 1.21 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 3.84 6.63 -2.39 -0.02 3.83 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -76.60 249.54 1.92 -74.68 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 0.95 Total: 5.06 kcal Atomic # 6 Polarization: -67.42 SS G_CDS: 2.41 Total: -65.01 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.29 Total: -60.16 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -2.70 Total: -41.31 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 1.74 Total: 52.98 kcal Atomic # 16 Polarization: 34.54 SS G_CDS: -0.78 Total: 33.77 kcal Total: -76.60 1.92 -74.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260758619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.307 kcal (2) G-P(sol) polarization free energy of solvation -76.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds