Wall clock time and date at job start Mon Mar 30 2020 02:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.53002 * 109.47123 * 119.99526 * 2 1 3 13 13 H 1.09003 * 109.38665 * 60.20387 * 12 2 1 14 14 C 1.52579 * 109.39208 * 179.97438 * 12 2 1 15 15 C 1.52584 * 110.72846 * 190.82540 * 14 12 2 16 16 C 1.53098 * 109.95600 * 289.33125 * 15 14 12 17 17 S 1.81750 * 108.84335 * 63.02240 * 16 15 14 18 18 O 1.42101 * 109.46912 * 62.72793 * 17 16 15 19 19 C 1.53097 * 109.39394 * 300.50042 * 12 2 1 20 20 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 22 22 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.08996 * 109.22785 * 311.15105 * 14 12 2 25 25 H 1.09004 * 109.22424 * 70.50745 * 14 12 2 26 26 H 1.09000 * 109.39079 * 49.47680 * 15 14 12 27 27 H 1.08997 * 109.39073 * 169.27742 * 15 14 12 28 28 H 1.09004 * 109.57720 * 182.83189 * 16 15 14 29 29 H 1.09000 * 109.57526 * 303.21218 * 16 15 14 30 30 H 1.08999 * 109.57159 * 296.63114 * 19 12 2 31 31 H 1.08997 * 109.57525 * 57.01221 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0400 -0.7212 1.2493 13 1 1.6789 -1.7496 1.2462 14 6 3.5658 -0.7207 1.2472 15 6 4.1077 -1.6532 2.3265 16 6 3.8488 -1.0551 3.7119 17 16 2.0543 -0.9269 3.9699 18 8 1.4790 -2.2261 3.9503 19 6 1.5184 -0.0053 2.4981 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 1.9028 -0.5285 -4.4375 24 1 3.9235 -1.0533 0.2728 25 1 3.9246 0.2915 1.4341 26 1 3.6112 -2.6206 2.2515 27 1 5.1804 -1.7851 2.1855 28 1 4.2824 -1.7011 4.4754 29 1 4.2982 -0.0638 3.7714 30 1 1.9219 1.0066 2.5341 31 1 0.4296 0.0346 2.4682 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260758621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:28 Heat of formation + Delta-G solvation = -53.082510 kcal Electronic energy + Delta-G solvation = -13316.420190 eV Core-core repulsion = 11109.976407 eV Total energy + Delta-G solvation = -2206.443782 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.47503 -35.30967 -33.79926 -31.84859 -29.16431 -27.13222 -24.82134 -23.02369 -20.60222 -19.07381 -17.39798 -16.73666 -15.52913 -14.98448 -14.56196 -13.85876 -13.54667 -13.35595 -12.95791 -12.82274 -12.71846 -12.10573 -11.65277 -11.43931 -11.06901 -10.94076 -10.58647 -10.43176 -10.32625 -10.09302 -9.72165 -9.54512 -9.09159 -8.88717 -8.53124 -7.84531 -6.05962 -4.04459 1.96610 2.83398 3.27735 3.36747 3.39904 4.09067 4.41811 5.11105 5.12385 5.26583 5.34654 5.44177 5.60253 5.77090 5.94292 6.07581 6.15317 6.27959 6.31904 6.44186 6.47320 6.74687 6.83606 6.91697 7.02032 7.19274 7.54705 7.79037 8.53470 8.97380 9.56759 11.07211 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.048215 B = 0.009400 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.587677 B = 2977.886686 C = 3270.014642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.018 3.982 3 H 0.028 0.972 4 C -0.511 4.511 5 H 0.074 0.926 6 C 0.067 3.933 7 N -0.903 5.903 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.267 1.267 11 H -0.299 1.299 12 C -0.063 4.063 13 H 0.065 0.935 14 C -0.123 4.123 15 C -0.117 4.117 16 C -0.437 4.437 17 S 1.217 4.783 18 O -0.858 6.858 19 C -0.432 4.432 20 H 0.048 0.952 21 H 0.031 0.969 22 H 0.037 0.963 23 H 0.263 0.737 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 5.549 15.544 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.002 4.002 3 H 0.046 0.954 4 C -0.549 4.549 5 H 0.092 0.908 6 C -0.134 4.134 7 N -0.542 5.542 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.192 1.192 11 H -0.227 1.227 12 C -0.082 4.082 13 H 0.083 0.917 14 C -0.161 4.161 15 C -0.155 4.155 16 C -0.574 4.574 17 S 1.416 4.584 18 O -0.853 6.853 19 C -0.570 4.570 20 H 0.068 0.932 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.110 0.890 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.005 5.165 16.131 16.968 hybrid contribution -0.100 -0.244 -2.243 2.258 sum 0.905 4.921 13.889 14.762 Atomic orbital electron populations 1.22227 0.99649 1.00528 0.98278 1.19141 0.91402 0.96279 0.93399 0.95425 1.21080 1.31736 1.13383 0.88697 0.90763 1.25044 0.95769 0.96704 0.95913 1.69908 1.45906 1.40442 0.97897 0.86791 0.80546 0.83781 0.76657 1.20854 1.19186 1.22731 1.20895 0.94453 0.99208 0.93611 0.91703 1.21642 0.95582 0.98859 0.99983 1.21460 1.01821 0.99546 0.92683 1.27608 1.20405 1.06771 1.02599 1.69720 0.86021 0.98210 1.04420 1.93110 1.70789 1.39001 1.82405 1.27777 1.08054 1.09101 1.12093 0.93237 0.95041 0.94457 0.92760 0.88974 0.92197 0.91994 0.91974 0.88368 0.86918 0.86987 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.31 37.16 0.31 -3.01 16 2 C 0.02 0.41 1.49 -91.77 -0.14 0.27 16 3 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 4 C -0.51 -14.32 8.25 -34.44 -0.28 -14.60 16 5 H 0.07 2.26 7.01 -52.49 -0.37 1.89 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 8 Si 0.89 22.31 24.37 -169.99 -4.14 18.16 16 9 H -0.28 -6.95 6.87 56.52 0.39 -6.56 16 10 H -0.27 -6.32 6.53 56.52 0.37 -5.95 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 12 C -0.06 -1.24 1.59 -90.78 -0.14 -1.38 16 13 H 0.06 1.47 8.06 -51.93 -0.42 1.05 16 14 C -0.12 -2.24 4.82 -27.16 -0.13 -2.37 16 15 C -0.12 -1.84 5.75 -26.89 -0.15 -2.00 16 16 C -0.44 -5.14 6.44 37.21 0.24 -4.90 16 17 S 1.22 14.95 13.75 -107.50 -1.48 13.47 16 18 O -0.86 -16.60 18.14 -35.23 -0.64 -17.24 16 19 C -0.43 -6.35 5.43 37.21 0.20 -6.15 16 20 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 21 H 0.03 0.58 6.35 -51.93 -0.33 0.25 16 22 H 0.04 0.86 3.27 -51.93 -0.17 0.69 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.09 1.96 6.29 -51.93 -0.33 1.63 16 25 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 26 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.11 1.59 6.26 -51.93 -0.33 1.27 16 LS Contribution 247.84 15.07 3.73 3.73 Total: -1.00 -35.68 247.84 -6.39 -42.07 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.44 Total: -0.72 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: -0.20 Total: -32.30 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 0.77 Total: -27.19 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.64 Total: -17.24 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.16 kcal Atomic # 16 Polarization: 14.95 SS G_CDS: -1.48 Total: 13.47 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -35.68 -6.39 -42.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260758621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.009 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds