Wall clock time and date at job start Mon Mar 30 2020 02:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.53002 * 109.47123 * 119.99526 * 2 1 3 13 13 H 1.09003 * 109.38665 * 60.20387 * 12 2 1 14 14 C 1.52579 * 109.39208 * 179.97438 * 12 2 1 15 15 C 1.52584 * 110.72846 * 190.82540 * 14 12 2 16 16 C 1.53098 * 109.95600 * 289.33125 * 15 14 12 17 17 S 1.81750 * 108.84335 * 63.02240 * 16 15 14 18 18 O 1.42101 * 109.46912 * 62.72793 * 17 16 15 19 19 C 1.53097 * 109.39394 * 300.50042 * 12 2 1 20 20 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 22 22 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.08996 * 109.22785 * 311.15105 * 14 12 2 25 25 H 1.09004 * 109.22424 * 70.50745 * 14 12 2 26 26 H 1.09000 * 109.39079 * 49.47680 * 15 14 12 27 27 H 1.08997 * 109.39073 * 169.27742 * 15 14 12 28 28 H 1.09004 * 109.57720 * 182.83189 * 16 15 14 29 29 H 1.09000 * 109.57526 * 303.21218 * 16 15 14 30 30 H 1.08999 * 109.57159 * 296.63114 * 19 12 2 31 31 H 1.08997 * 109.57525 * 57.01221 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0400 -0.7212 1.2493 13 1 1.6789 -1.7496 1.2462 14 6 3.5658 -0.7207 1.2472 15 6 4.1077 -1.6532 2.3265 16 6 3.8488 -1.0551 3.7119 17 16 2.0543 -0.9269 3.9699 18 8 1.4790 -2.2261 3.9503 19 6 1.5184 -0.0053 2.4981 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 1.9028 -0.5285 -4.4375 24 1 3.9235 -1.0533 0.2728 25 1 3.9246 0.2915 1.4341 26 1 3.6112 -2.6206 2.2515 27 1 5.1804 -1.7851 2.1855 28 1 4.2824 -1.7011 4.4754 29 1 4.2982 -0.0638 3.7714 30 1 1.9219 1.0066 2.5341 31 1 0.4296 0.0346 2.4682 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260758621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:28 Heat of formation + Delta-G solvation = -80.622267 kcal Electronic energy + Delta-G solvation = -13317.614403 eV Core-core repulsion = 11109.976407 eV Total energy + Delta-G solvation = -2207.637996 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 216.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.04178 -36.65489 -35.48158 -33.78330 -30.71928 -28.51957 -26.66165 -24.58718 -22.07445 -20.75086 -19.01819 -18.35530 -17.04311 -16.41399 -16.04956 -15.38057 -15.05617 -14.77295 -14.65711 -14.42774 -14.10056 -13.81843 -13.22515 -12.84430 -12.62862 -12.45692 -12.32241 -12.07581 -11.85960 -11.71570 -11.41182 -11.28590 -10.91202 -10.76841 -10.46282 -9.03641 -8.30479 -6.33719 0.94597 1.29663 1.33606 1.45903 1.80220 2.31732 3.01727 3.05361 3.81318 3.91545 4.04767 4.12076 4.30734 4.44626 4.60576 4.61505 4.73670 4.85942 4.95885 4.98200 5.06732 5.10152 5.23679 5.30727 5.41674 5.54988 5.72110 5.74602 6.31131 6.72993 7.30870 8.86758 Molecular weight = 216.09amu Principal moments of inertia in cm(-1) A = 0.048215 B = 0.009400 C = 0.008561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.587677 B = 2977.886686 C = 3270.014642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.014 3.986 3 H 0.042 0.958 4 C -0.513 4.513 5 H 0.025 0.975 6 C 0.001 3.999 7 N -0.957 5.957 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.233 1.233 11 H -0.301 1.301 12 C -0.064 4.064 13 H 0.018 0.982 14 C -0.122 4.122 15 C -0.118 4.118 16 C -0.432 4.432 17 S 1.300 4.700 18 O -0.932 6.932 19 C -0.438 4.438 20 H 0.030 0.970 21 H 0.076 0.924 22 H 0.030 0.970 23 H 0.263 0.737 24 H 0.043 0.957 25 H 0.093 0.907 26 H 0.023 0.977 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 8.757 18.290 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.005 4.005 3 H 0.061 0.939 4 C -0.551 4.551 5 H 0.043 0.957 6 C -0.195 4.195 7 N -0.598 5.598 8 Si 0.784 3.216 9 H -0.202 1.202 10 H -0.156 1.156 11 H -0.229 1.229 12 C -0.083 4.083 13 H 0.036 0.964 14 C -0.159 4.159 15 C -0.156 4.156 16 C -0.570 4.570 17 S 1.501 4.499 18 O -0.928 6.928 19 C -0.575 4.575 20 H 0.049 0.951 21 H 0.095 0.905 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.112 0.888 26 H 0.042 0.958 27 H 0.094 0.906 28 H 0.136 0.864 29 H 0.178 0.822 30 H 0.174 0.826 31 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.806 8.372 18.907 20.693 hybrid contribution 0.089 -1.356 -3.106 3.391 sum 0.895 7.016 15.800 17.311 Atomic orbital electron populations 1.22198 0.98456 1.00012 1.00103 1.19169 0.92392 0.96450 0.92516 0.93947 1.21437 1.30448 1.11998 0.91250 0.95697 1.26023 0.97523 1.00505 0.95400 1.70086 1.48237 1.42907 0.98600 0.85712 0.78378 0.79850 0.77612 1.20237 1.15638 1.22921 1.20793 0.95502 0.96988 0.95003 0.96365 1.21583 0.94679 1.01071 0.98563 1.21410 1.02064 0.97487 0.94667 1.27655 1.19801 1.09607 0.99912 1.68893 0.85076 0.94759 1.01204 1.92977 1.73455 1.42909 1.83415 1.27890 1.08639 1.11264 1.09715 0.95125 0.90489 0.95178 0.92786 0.93796 0.88828 0.95794 0.90626 0.86444 0.82186 0.82561 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.38 8.31 71.98 0.60 -5.78 16 2 C 0.01 0.66 1.49 -11.54 -0.02 0.64 16 3 H 0.04 1.83 7.20 -2.38 -0.02 1.81 16 4 C -0.51 -29.92 8.25 25.60 0.21 -29.71 16 5 H 0.02 1.64 7.01 -2.91 -0.02 1.62 16 6 C 0.00 0.07 5.45 84.66 0.46 0.53 16 7 N -0.96 -61.92 13.96 21.45 0.30 -61.62 16 8 Si 0.96 45.57 24.37 68.60 1.67 47.24 16 9 H -0.28 -12.79 6.87 99.48 0.68 -12.10 16 10 H -0.23 -9.77 6.53 99.48 0.65 -9.12 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 C -0.06 -2.48 1.59 -10.90 -0.02 -2.49 16 13 H 0.02 0.85 8.06 -2.39 -0.02 0.83 16 14 C -0.12 -4.35 4.82 30.32 0.15 -4.20 16 15 C -0.12 -3.59 5.75 30.49 0.18 -3.41 16 16 C -0.43 -8.31 6.44 72.01 0.46 -7.84 16 17 S 1.30 27.68 13.75 -56.49 -0.78 26.91 16 18 O -0.93 -35.38 18.14 -148.98 -2.70 -38.08 16 19 C -0.44 -11.19 5.43 72.01 0.39 -10.80 16 20 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.08 2.54 6.35 -2.39 -0.02 2.53 16 22 H 0.03 1.30 3.27 -2.39 -0.01 1.29 16 23 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 24 H 0.04 1.97 6.29 -2.39 -0.02 1.95 16 25 H 0.09 2.69 8.08 -2.39 -0.02 2.67 16 26 H 0.02 0.88 8.06 -2.39 -0.02 0.86 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.16 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.11 2.81 6.26 -2.39 -0.01 2.80 16 Total: -1.00 -84.13 247.84 1.93 -82.20 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.02 Total: 6.42 kcal Atomic # 6 Polarization: -65.47 SS G_CDS: 2.41 Total: -63.06 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.30 Total: -61.62 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -2.70 Total: -38.08 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.67 Total: 47.24 kcal Atomic # 16 Polarization: 27.68 SS G_CDS: -0.78 Total: 26.91 kcal Total: -84.13 1.93 -82.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260758621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.579 kcal (2) G-P(sol) polarization free energy of solvation -84.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds