Wall clock time and date at job start Mon Mar 30 2020 02:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39894 * 109.47334 * 2 1 4 4 F 1.39905 * 109.46750 * 239.99957 * 2 1 3 5 5 C 1.50701 * 109.46837 * 120.00091 * 2 1 3 6 6 C 1.35315 * 126.13100 * 359.68757 * 5 2 1 7 7 C 1.39867 * 107.92134 * 180.26483 * 6 5 2 8 8 N 1.30834 * 108.20347 * 359.97438 * 7 6 5 9 9 N 1.34954 * 126.12392 * 179.97438 * 5 2 1 10 10 C 1.46499 * 126.03713 * 359.75543 * 9 5 2 11 11 C 1.50704 * 109.46933 * 90.00045 * 10 9 5 12 12 H 1.07998 * 119.99814 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99919 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00073 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00088 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46862 * 59.99840 * 15 13 11 17 17 H 1.48499 * 109.47423 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47237 * 300.00173 * 15 13 11 19 19 H 1.09009 * 109.47184 * 299.99972 * 1 2 3 20 20 H 1.08997 * 109.47197 * 59.99846 * 1 2 3 21 21 H 1.08995 * 109.47618 * 180.02562 * 1 2 3 22 22 H 1.07997 * 126.03615 * 0.26007 * 6 5 2 23 23 H 1.08000 * 125.89932 * 180.02562 * 7 6 5 24 24 H 1.08991 * 109.47300 * 209.99768 * 10 9 5 25 25 H 1.09005 * 109.47394 * 330.00411 * 10 9 5 26 26 H 0.97005 * 120.00035 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 6 1.2678 -1.2635 2.2004 7 6 2.1227 -1.8138 3.1609 8 7 3.3562 -1.5993 2.7811 9 7 3.3252 -0.9043 1.5652 10 6 4.4904 -0.4652 0.7934 11 6 4.8923 0.9188 1.2341 12 1 4.3351 1.4212 2.0109 13 6 5.9705 1.5440 0.6446 14 7 6.6487 0.9323 -0.3018 15 14 6.4683 3.2598 1.1903 16 1 6.8109 3.2398 2.6351 17 1 7.6495 3.7049 0.4081 18 1 5.3405 4.1985 0.9619 19 1 -0.3634 0.5139 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 0.1883 -1.2775 2.2279 23 1 1.8174 -2.3278 4.0603 24 1 5.3179 -1.1544 0.9611 25 1 4.2392 -0.4502 -0.2672 26 1 7.4076 1.3721 -0.7162 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260794962.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:08 Heat of formation + Delta-G solvation = -30.089085 kcal Electronic energy + Delta-G solvation = -14817.107866 eV Core-core repulsion = 11954.280424 eV Total energy + Delta-G solvation = -2862.827442 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.50174 -46.48516 -40.50335 -33.73564 -32.56718 -31.59101 -28.44969 -27.05320 -23.79029 -23.06856 -20.31940 -19.46057 -17.17687 -17.08787 -16.56204 -15.89126 -14.91045 -14.37307 -13.98422 -13.42188 -13.35511 -12.96538 -12.83062 -12.63726 -12.40973 -12.22809 -11.93579 -11.48698 -11.05933 -10.96195 -10.78087 -10.27603 -9.95031 -9.85996 -8.79340 -8.60220 -7.95354 -6.22557 -4.29346 2.36886 3.26128 3.27486 3.28381 3.29881 3.36924 4.06704 4.32025 4.38496 4.80327 4.96274 5.11632 5.34259 5.56339 5.84462 5.86029 5.94743 6.07399 6.40829 6.85045 6.98018 7.27425 7.62004 7.81395 7.87513 8.39018 8.73880 9.36035 10.86045 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.031384 B = 0.011621 C = 0.010041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.949684 B = 2408.939017 C = 2787.816096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.366 3.634 3 F -0.178 7.178 4 F -0.194 7.194 5 C 0.010 3.990 6 C -0.260 4.260 7 C 0.015 3.985 8 N -0.279 5.279 9 N -0.300 5.300 10 C 0.248 3.752 11 C -0.532 4.532 12 H 0.064 0.936 13 C 0.067 3.933 14 N -0.891 5.891 15 Si 0.908 3.092 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.273 1.273 19 H 0.092 0.908 20 H 0.084 0.916 21 H 0.091 0.909 22 H 0.144 0.856 23 H 0.178 0.822 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 -2.224 1.003 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.328 3.672 3 F -0.159 7.159 4 F -0.175 7.175 5 C -0.123 4.123 6 C -0.291 4.291 7 C -0.167 4.167 8 N -0.104 5.104 9 N -0.080 5.080 10 C 0.131 3.869 11 C -0.571 4.571 12 H 0.083 0.917 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.735 3.265 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.198 1.198 19 H 0.111 0.889 20 H 0.103 0.897 21 H 0.110 0.890 22 H 0.161 0.839 23 H 0.195 0.805 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.344 -2.314 1.043 10.650 hybrid contribution -0.341 1.081 -0.046 1.134 sum -10.685 -1.233 0.996 10.802 Atomic orbital electron populations 1.22707 0.90464 1.05480 1.05356 1.18904 0.93015 0.75496 0.79786 1.93132 1.90500 1.35765 1.96501 1.93034 1.90703 1.81112 1.52698 1.21279 0.87599 1.04775 0.98632 1.21043 0.99957 1.11013 0.97083 1.23651 0.90414 1.02252 1.00409 1.77390 1.21395 1.14332 0.97258 1.49568 1.05716 1.37428 1.15313 1.19922 0.80375 0.96543 0.90045 1.21157 1.14619 0.99280 1.22013 0.91749 1.24907 0.95518 0.98703 0.94548 1.69916 1.19821 1.38295 1.24891 0.86383 0.78075 0.83254 0.78816 1.19940 1.20891 1.19826 0.88902 0.89720 0.89039 0.83854 0.80535 0.92566 0.92562 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 8.29 37.16 0.31 -1.92 15 2 C 0.37 6.80 2.03 -27.88 -0.06 6.74 15 3 F -0.18 -3.85 17.03 2.25 0.04 -3.82 15 4 F -0.19 -3.89 16.10 2.25 0.04 -3.85 15 5 C 0.01 0.20 6.28 -82.26 -0.52 -0.32 15 6 C -0.26 -4.41 9.74 -40.01 -0.39 -4.80 15 7 C 0.02 0.27 12.03 -17.37 -0.21 0.06 15 8 N -0.28 -6.33 12.58 30.62 0.39 -5.94 15 9 N -0.30 -7.22 3.60 -58.31 -0.21 -7.43 15 10 C 0.25 6.71 5.99 -5.19 -0.03 6.68 15 11 C -0.53 -15.28 9.39 -34.44 -0.32 -15.60 15 12 H 0.06 1.89 7.81 -52.49 -0.41 1.48 15 13 C 0.07 1.89 5.46 -17.82 -0.10 1.80 15 14 N -0.89 -26.07 13.29 55.43 0.74 -25.33 15 15 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 15 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 19 H 0.09 1.00 7.93 -51.92 -0.41 0.59 15 20 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.09 0.94 7.94 -51.93 -0.41 0.53 15 22 H 0.14 1.81 7.29 -52.49 -0.38 1.43 15 23 H 0.18 2.34 8.06 -52.49 -0.42 1.92 15 24 H 0.06 1.60 8.14 -51.93 -0.42 1.17 15 25 H 0.06 1.57 6.96 -51.93 -0.36 1.21 15 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 243.24 15.07 3.67 3.67 Total: -1.00 -31.78 243.24 -4.07 -35.84 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -2.38 Total: -2.63 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.32 Total: -7.36 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.91 Total: -38.70 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.07 Total: -7.67 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.78 -4.07 -35.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794962.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.753 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds