Wall clock time and date at job start Mon Mar 30 2020 02:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 F 1.39894 * 109.47334 * 2 1 4 4 F 1.39905 * 109.46750 * 239.99957 * 2 1 3 5 5 C 1.50701 * 109.46837 * 120.00091 * 2 1 3 6 6 C 1.35315 * 126.13100 * 359.68757 * 5 2 1 7 7 C 1.39867 * 107.92134 * 180.26483 * 6 5 2 8 8 N 1.30834 * 108.20347 * 359.97438 * 7 6 5 9 9 N 1.34954 * 126.12392 * 179.97438 * 5 2 1 10 10 C 1.46499 * 126.03713 * 359.75543 * 9 5 2 11 11 C 1.50704 * 109.46933 * 90.00045 * 10 9 5 12 12 H 1.07998 * 119.99814 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99919 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00073 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00088 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46862 * 59.99840 * 15 13 11 17 17 H 1.48499 * 109.47423 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47237 * 300.00173 * 15 13 11 19 19 H 1.09009 * 109.47184 * 299.99972 * 1 2 3 20 20 H 1.08997 * 109.47197 * 59.99846 * 1 2 3 21 21 H 1.08995 * 109.47618 * 180.02562 * 1 2 3 22 22 H 1.07997 * 126.03615 * 0.26007 * 6 5 2 23 23 H 1.08000 * 125.89932 * 180.02562 * 7 6 5 24 24 H 1.08991 * 109.47300 * 209.99768 * 10 9 5 25 25 H 1.09005 * 109.47394 * 330.00411 * 10 9 5 26 26 H 0.97005 * 120.00035 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 6 1.2678 -1.2635 2.2004 7 6 2.1227 -1.8138 3.1609 8 7 3.3562 -1.5993 2.7811 9 7 3.3252 -0.9043 1.5652 10 6 4.4904 -0.4652 0.7934 11 6 4.8923 0.9188 1.2341 12 1 4.3351 1.4212 2.0109 13 6 5.9705 1.5440 0.6446 14 7 6.6487 0.9323 -0.3018 15 14 6.4683 3.2598 1.1903 16 1 6.8109 3.2398 2.6351 17 1 7.6495 3.7049 0.4081 18 1 5.3405 4.1985 0.9619 19 1 -0.3634 0.5139 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 0.1883 -1.2775 2.2279 23 1 1.8174 -2.3278 4.0603 24 1 5.3179 -1.1544 0.9611 25 1 4.2392 -0.4502 -0.2672 26 1 7.4076 1.3721 -0.7162 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260794962.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:08 Heat of formation + Delta-G solvation = -51.309822 kcal Electronic energy + Delta-G solvation = -14818.028067 eV Core-core repulsion = 11954.280424 eV Total energy + Delta-G solvation = -2863.747643 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 216.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -50.00571 -48.02750 -42.05426 -35.78595 -33.88109 -33.48188 -29.82068 -28.98134 -25.48394 -24.74037 -21.85925 -20.99666 -18.98627 -18.63481 -18.47459 -17.28295 -16.74804 -16.13562 -15.68479 -14.95340 -14.87300 -14.59250 -14.38792 -14.19656 -13.83229 -13.58204 -13.33769 -13.09381 -12.97855 -12.71791 -12.34318 -12.32070 -11.90257 -11.47156 -10.78349 -10.46727 -9.54796 -8.38858 -6.55711 0.81310 1.32883 1.36589 1.44625 1.68322 1.89884 2.30364 2.67030 2.91984 3.07823 3.51466 3.75831 3.92683 4.49720 4.56773 4.72436 4.76819 4.78619 4.91417 4.97802 5.14607 5.45311 5.72010 5.83588 6.00773 6.52001 6.85026 7.14417 8.69421 Molecular weight = 216.08amu Principal moments of inertia in cm(-1) A = 0.031384 B = 0.011621 C = 0.010041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.949684 B = 2408.939017 C = 2787.816096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.348 3.652 3 F -0.204 7.204 4 F -0.211 7.211 5 C -0.016 4.016 6 C -0.232 4.232 7 C 0.030 3.970 8 N -0.331 5.331 9 N -0.342 5.342 10 C 0.270 3.730 11 C -0.548 4.548 12 H 0.051 0.949 13 C 0.017 3.983 14 N -0.922 5.922 15 Si 0.975 3.025 16 H -0.268 1.268 17 H -0.270 1.270 18 H -0.267 1.267 19 H 0.113 0.887 20 H 0.101 0.899 21 H 0.117 0.883 22 H 0.199 0.801 23 H 0.227 0.773 24 H 0.025 0.975 25 H 0.034 0.966 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.271 -1.854 2.156 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.310 3.690 3 F -0.185 7.185 4 F -0.192 7.192 5 C -0.146 4.146 6 C -0.262 4.262 7 C -0.154 4.154 8 N -0.154 5.154 9 N -0.123 5.123 10 C 0.151 3.849 11 C -0.586 4.586 12 H 0.069 0.931 13 C -0.183 4.183 14 N -0.560 5.560 15 Si 0.797 3.203 16 H -0.193 1.193 17 H -0.194 1.194 18 H -0.192 1.192 19 H 0.132 0.868 20 H 0.119 0.881 21 H 0.136 0.864 22 H 0.216 0.784 23 H 0.244 0.756 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.706 -1.954 2.191 13.041 hybrid contribution 0.291 0.856 -0.344 0.967 sum -12.415 -1.098 1.847 12.600 Atomic orbital electron populations 1.22778 0.84772 1.07803 1.07290 1.19835 0.96595 0.73923 0.78652 1.93067 1.91278 1.37656 1.96546 1.92993 1.91350 1.81352 1.53551 1.22038 0.86719 1.05546 1.00305 1.21677 1.02182 1.07727 0.94611 1.24595 0.88979 1.00353 1.01427 1.77324 1.24577 1.15963 0.97565 1.49245 1.06051 1.40438 1.16549 1.19231 0.81058 0.95235 0.89412 1.21302 1.15062 1.00269 1.21950 0.93067 1.25842 0.95244 1.02875 0.94385 1.70018 1.20229 1.40050 1.25702 0.85360 0.78154 0.78071 0.78670 1.19320 1.19417 1.19218 0.86804 0.88068 0.86410 0.78407 0.75641 0.95740 0.94794 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 8.29 71.98 0.60 -2.93 15 2 C 0.35 12.66 2.03 29.85 0.06 12.72 15 3 F -0.20 -8.97 17.03 44.97 0.77 -8.21 15 4 F -0.21 -8.61 16.10 44.97 0.72 -7.89 15 5 C -0.02 -0.64 6.28 41.40 0.26 -0.38 15 6 C -0.23 -6.97 9.74 21.99 0.21 -6.76 15 7 C 0.03 0.96 12.03 85.24 1.02 1.99 15 8 N -0.33 -14.95 12.58 -57.03 -0.72 -15.66 15 9 N -0.34 -16.84 3.60 -338.40 -1.22 -18.06 15 10 C 0.27 15.43 5.99 85.63 0.51 15.95 15 11 C -0.55 -32.66 9.39 25.60 0.24 -32.42 15 12 H 0.05 3.11 7.81 -2.91 -0.02 3.09 15 13 C 0.02 1.00 5.46 84.65 0.46 1.46 15 14 N -0.92 -55.49 13.29 21.45 0.28 -55.21 15 15 Si 0.97 45.28 29.54 68.60 2.03 47.31 15 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 19 H 0.11 1.91 7.93 -2.38 -0.02 1.89 15 20 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.12 1.84 7.94 -2.39 -0.02 1.82 15 22 H 0.20 3.66 7.29 -2.91 -0.02 3.63 15 23 H 0.23 4.82 8.06 -2.91 -0.02 4.80 15 24 H 0.02 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.03 2.04 6.96 -2.38 -0.02 2.02 15 26 H 0.27 15.33 8.31 -92.70 -0.77 14.56 15 Total: -1.00 -73.38 243.24 6.43 -66.95 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.19 Total: 1.14 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 3.37 Total: -10.37 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -1.65 Total: -88.93 kcal Atomic # 9 Polarization: -17.58 SS G_CDS: 1.49 Total: -16.09 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.38 6.43 -66.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794962.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.642 kcal (2) G-P(sol) polarization free energy of solvation -73.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds