Wall clock time and date at job start Mon Mar 30 2020 02:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31480 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48494 * 109.47279 * 240.00320 * 3 2 1 5 5 H 1.48503 * 109.46534 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46837 * 119.99758 * 3 2 1 7 7 C 1.38880 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99870 * 179.97438 * 7 2 1 9 9 N 1.37193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99659 * 179.97438 * 9 7 2 11 11 O 1.21579 * 119.99838 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99761 * 180.02562 * 10 9 7 13 13 C 1.46498 * 119.99658 * 185.01551 * 12 10 9 14 14 H 1.08997 * 110.45232 * 346.97640 * 13 12 10 15 15 C 1.54275 * 110.39926 * 224.59300 * 13 12 10 16 16 C 1.53851 * 108.92737 * 213.25637 * 15 13 12 17 17 C 1.55130 * 106.90134 * 47.25840 * 16 15 13 18 18 S 1.83093 * 110.40095 * 109.36818 * 13 12 10 19 19 H 0.96995 * 119.99556 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00279 * 0.02562 * 9 7 2 21 21 H 0.97000 * 119.99977 * 5.01979 * 12 10 9 22 22 H 1.09005 * 109.61028 * 333.17722 * 15 13 12 23 23 H 1.09002 * 109.61044 * 93.33691 * 15 13 12 24 24 H 1.09004 * 109.97764 * 287.89317 * 16 15 13 25 25 H 1.09003 * 110.00592 * 166.63532 * 16 15 13 26 26 H 1.08997 * 110.85970 * 199.70787 * 17 16 15 27 27 H 1.08998 * 110.86101 * 76.05663 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 3.1025 1.6964 -1.2125 5 1 1.2838 2.7464 0.0006 6 1 3.1025 1.6963 1.2125 7 6 2.0092 -1.2028 -0.0005 8 1 3.0891 -1.2028 -0.0010 9 7 1.3231 -2.3909 -0.0005 10 6 1.9971 -3.5581 -0.0016 11 8 3.2129 -3.5580 -0.0030 12 7 1.3232 -4.7253 -0.0021 13 6 2.0516 -5.9916 0.1077 14 1 3.1183 -5.8323 -0.0496 15 6 1.5053 -7.0160 -0.9084 16 6 1.6073 -8.4254 -0.3000 17 6 1.0393 -8.3369 1.1409 18 16 1.7550 -6.7587 1.7435 19 1 -0.4849 0.8400 0.0004 20 1 0.3532 -2.3909 -0.0005 21 1 0.3559 -4.7268 -0.0752 22 1 0.4631 -6.7889 -1.1325 23 1 2.0924 -6.9702 -1.8257 24 1 2.6494 -8.7438 -0.2705 25 1 1.0197 -9.1294 -0.8893 26 1 1.3838 -9.1754 1.7461 27 1 -0.0495 -8.2887 1.1265 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260803636.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:04 Heat of formation + Delta-G solvation = -61.916013 kcal Electronic energy + Delta-G solvation = -12370.561396 eV Core-core repulsion = 10060.194221 eV Total energy + Delta-G solvation = -2310.367175 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.71208 -37.44728 -36.00193 -34.58049 -33.14439 -29.37324 -26.89629 -25.08760 -21.97355 -21.86409 -20.06675 -19.23988 -17.75308 -17.12245 -16.54860 -15.94578 -15.76104 -15.25539 -15.16879 -14.69914 -13.95352 -13.49576 -13.19352 -12.89679 -12.87847 -12.42485 -12.37997 -12.10703 -11.85732 -11.57440 -11.08666 -10.99994 -10.14910 -9.81799 -8.82557 -8.42412 -5.91650 0.75369 1.41995 1.43515 1.50057 1.53468 2.05322 2.36950 2.46616 3.27404 3.57427 3.83346 3.89174 4.05017 4.19144 4.38737 4.66842 4.74161 4.95061 4.97945 5.16650 5.38551 5.54061 5.71921 6.38236 6.77598 7.13066 7.65782 8.13110 8.76373 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.072574 B = 0.006322 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.720390 B = 4428.141439 C = 4452.129411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.017 4.017 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.321 4.321 8 H 0.080 0.920 9 N -0.589 5.589 10 C 0.654 3.346 11 O -0.664 6.664 12 N -0.717 5.717 13 C 0.227 3.773 14 H 0.097 0.903 15 C -0.133 4.133 16 C -0.115 4.115 17 C -0.051 4.051 18 S -0.397 6.397 19 H 0.276 0.724 20 H 0.395 0.605 21 H 0.406 0.594 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 -15.631 -2.129 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.216 4.216 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.451 4.451 8 H 0.098 0.902 9 N -0.229 5.229 10 C 0.354 3.646 11 O -0.550 6.550 12 N -0.374 5.374 13 C 0.010 3.990 14 H 0.115 0.885 15 C -0.174 4.174 16 C -0.153 4.153 17 C -0.199 4.199 18 S -0.173 6.173 19 H 0.085 0.915 20 H 0.229 0.771 21 H 0.242 0.758 22 H 0.110 0.890 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.455 -15.037 -1.002 15.140 hybrid contribution -0.671 0.722 -0.846 1.299 sum -2.125 -14.315 -1.849 14.589 Atomic orbital electron populations 1.69705 1.06738 1.29112 1.51406 1.26003 0.96645 1.02176 0.96769 0.84939 0.77639 0.76514 0.78912 1.19520 1.19510 1.19914 1.19531 0.92419 0.83079 1.50081 0.90249 1.40956 1.08778 1.03104 1.70108 1.16150 0.85294 0.81369 0.81785 1.90690 1.13922 1.87055 1.63332 1.45009 1.09867 1.03097 1.79476 1.23336 0.99490 0.85271 0.90927 0.88499 1.22790 1.03518 0.92972 0.98108 1.22514 1.03469 0.95845 0.93508 1.24374 1.03326 0.93316 0.98871 1.88381 1.82946 1.25006 1.20965 0.91500 0.77059 0.75793 0.88952 0.88355 0.89876 0.86096 0.86281 0.87803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.54 13.05 21.65 0.28 -51.25 15 2 C -0.02 -0.94 5.50 84.90 0.47 -0.48 15 3 Si 1.00 44.14 29.55 68.60 2.03 46.16 15 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 7 C -0.32 -18.87 9.68 84.01 0.81 -18.06 15 8 H 0.08 4.93 7.16 -2.91 -0.02 4.91 15 9 N -0.59 -31.63 5.29 -320.70 -1.70 -33.33 15 10 C 0.65 33.22 8.51 179.05 1.52 34.75 15 11 O -0.66 -38.98 15.32 -3.96 -0.06 -39.04 15 12 N -0.72 -27.19 5.06 -464.62 -2.35 -29.54 15 13 C 0.23 7.35 3.93 86.81 0.34 7.69 15 14 H 0.10 3.76 7.05 -2.39 -0.02 3.74 15 15 C -0.13 -2.72 6.11 31.31 0.19 -2.53 15 16 C -0.11 -1.64 6.46 31.61 0.20 -1.43 15 17 C -0.05 -0.89 7.38 72.71 0.54 -0.35 15 18 S -0.40 -12.40 22.99 -56.49 -1.30 -13.70 15 19 H 0.28 14.37 8.31 -92.71 -0.77 13.60 15 20 H 0.40 20.16 7.92 -92.71 -0.73 19.43 15 21 H 0.41 13.06 8.71 -92.71 -0.81 12.25 15 22 H 0.09 1.66 7.95 -2.38 -0.02 1.65 15 23 H 0.10 1.88 8.14 -2.39 -0.02 1.86 15 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 15 25 H 0.12 0.97 8.14 -2.39 -0.02 0.95 15 26 H 0.12 1.66 8.14 -2.39 -0.02 1.64 15 27 H 0.10 1.53 8.14 -2.39 -0.02 1.51 15 Total: -1.00 -71.92 247.98 0.63 -71.28 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.35 Total: 29.83 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 4.08 Total: 19.59 kcal Atomic # 7 Polarization: -110.35 SS G_CDS: -3.77 Total: -114.12 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.06 Total: -39.04 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -12.40 SS G_CDS: -1.30 Total: -13.70 kcal Total: -71.92 0.63 -71.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260803636.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.366 kcal (2) G-P(sol) polarization free energy of solvation -71.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds