Wall clock time and date at job start Mon Mar 30 2020 02:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31483 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48506 * 109.47098 * 239.99883 * 3 2 1 5 5 H 1.48495 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46920 * 120.00192 * 3 2 1 7 7 C 1.38879 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99815 * 180.02562 * 7 2 1 9 9 N 1.37197 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99720 * 180.02562 * 9 7 2 11 11 O 1.21585 * 119.99933 * 359.97438 * 10 9 7 12 12 N 1.34769 * 119.99594 * 180.02562 * 10 9 7 13 13 C 1.46502 * 119.99670 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.45473 * 34.76506 * 13 12 10 15 15 C 1.52937 * 109.60516 * 154.99686 * 13 12 10 16 16 C 1.53707 * 112.49345 * 150.02800 * 15 13 12 17 17 S 1.83401 * 104.96737 * 357.17785 * 16 15 13 18 18 C 1.55155 * 109.60245 * 274.53571 * 13 12 10 19 19 H 0.97000 * 119.99433 * 359.97438 * 1 2 3 20 20 H 0.96995 * 120.00200 * 0.02562 * 9 7 2 21 21 H 0.96995 * 120.00327 * 359.97438 * 12 10 9 22 22 H 1.09008 * 108.88853 * 29.23583 * 15 13 12 23 23 H 1.09002 * 108.89250 * 270.82202 * 15 13 12 24 24 H 1.09004 * 110.34318 * 116.04680 * 16 15 13 25 25 H 1.09002 * 110.34722 * 238.30606 * 16 15 13 26 26 H 1.09000 * 111.13003 * 316.54101 * 18 13 12 27 27 H 1.08992 * 111.13132 * 80.67664 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6178 0.0000 4 1 3.1026 1.6965 -1.2125 5 1 1.2838 2.7464 -0.0006 6 1 3.1025 1.6964 1.2125 7 6 2.0092 -1.2027 -0.0005 8 1 3.0892 -1.2027 -0.0001 9 7 1.3232 -2.3909 -0.0005 10 6 1.9971 -3.5581 -0.0005 11 8 3.2130 -3.5580 -0.0010 12 7 1.3232 -4.7252 -0.0011 13 6 2.0558 -5.9939 -0.0016 14 1 2.9685 -5.8864 0.5845 15 6 1.1816 -7.0914 0.6068 16 6 1.4892 -8.4796 0.0229 17 16 2.7658 -8.1816 -1.2597 18 6 2.4161 -6.3863 -1.4589 19 1 -0.4849 0.8401 0.0004 20 1 0.3533 -2.3909 -0.0005 21 1 0.3533 -4.7252 -0.0011 22 1 0.1345 -6.8536 0.4186 23 1 1.3464 -7.1174 1.6840 24 1 1.8782 -9.1393 0.7986 25 1 0.5936 -8.9087 -0.4265 26 1 1.5730 -6.2222 -2.1299 27 1 3.2997 -5.8490 -1.8034 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260833405.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:44 Heat of formation + Delta-G solvation = -57.010707 kcal Electronic energy + Delta-G solvation = -12438.896065 eV Core-core repulsion = 10128.741600 eV Total energy + Delta-G solvation = -2310.154465 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.76336 -37.74279 -35.89147 -33.83062 -32.79636 -30.00221 -27.02283 -25.51740 -22.04383 -21.58281 -20.00564 -18.92641 -17.73896 -17.01092 -16.40724 -16.17874 -15.67869 -15.26714 -14.98042 -14.69495 -14.04562 -13.51698 -13.31691 -12.94932 -12.91135 -12.55965 -12.39559 -12.10398 -11.86215 -11.53380 -11.17159 -10.90349 -10.15574 -9.83486 -8.76206 -8.39975 -5.88371 0.78458 1.31443 1.43580 1.44873 1.54263 2.15755 2.36225 2.52581 3.27965 3.59368 3.79126 3.94587 3.95177 4.14493 4.19539 4.56998 4.68598 4.81141 4.98044 5.04913 5.42599 5.70211 5.78882 6.45581 6.85015 7.17947 7.74007 8.20922 8.78961 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.078666 B = 0.006097 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.850907 B = 4591.203608 C = 4774.578460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.018 4.018 3 Si 0.993 3.007 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.318 4.318 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.656 3.344 11 O -0.665 6.665 12 N -0.733 5.733 13 C 0.167 3.833 14 H 0.071 0.929 15 C -0.129 4.129 16 C -0.048 4.048 17 S -0.333 6.333 18 C -0.069 4.069 19 H 0.274 0.726 20 H 0.395 0.605 21 H 0.405 0.595 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.119 0.881 25 H 0.115 0.885 26 H 0.099 0.901 27 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -13.449 0.688 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.216 4.216 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.448 4.448 8 H 0.096 0.904 9 N -0.235 5.235 10 C 0.357 3.643 11 O -0.551 6.551 12 N -0.391 5.391 13 C 0.059 3.941 14 H 0.089 0.911 15 C -0.168 4.168 16 C -0.196 4.196 17 S -0.108 6.108 18 C -0.219 4.219 19 H 0.084 0.916 20 H 0.229 0.771 21 H 0.241 0.759 22 H 0.118 0.882 23 H 0.117 0.883 24 H 0.138 0.862 25 H 0.134 0.866 26 H 0.118 0.882 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.402 -14.018 0.167 14.089 hybrid contribution -1.108 1.719 0.342 2.074 sum -2.510 -12.299 0.509 12.563 Atomic orbital electron populations 1.69699 1.06640 1.28947 1.51832 1.25937 0.96605 1.02030 0.97061 0.84986 0.77650 0.76828 0.78838 1.19876 1.19682 1.19786 1.19498 0.92360 0.83187 1.49719 0.90352 1.40937 1.08745 1.03103 1.70736 1.16148 0.85262 0.81363 0.81559 1.90711 1.14007 1.87179 1.63183 1.44849 1.09383 1.03043 1.81798 1.21662 0.95884 0.83070 0.93519 0.91121 1.22078 1.01259 0.91059 1.02391 1.23968 0.98939 0.99172 0.97537 1.87930 1.53511 1.12941 1.56447 1.24752 1.04699 0.91712 1.00719 0.91634 0.77068 0.75857 0.88166 0.88293 0.86228 0.86640 0.88234 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.55 13.05 21.65 0.28 -50.26 15 2 C -0.02 -0.96 5.50 84.90 0.47 -0.49 15 3 Si 0.99 43.45 29.55 68.60 2.03 45.48 15 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 5 H -0.27 -11.25 7.11 99.48 0.71 -10.54 15 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 7 C -0.32 -18.17 9.68 84.01 0.81 -17.35 15 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 15 9 N -0.59 -30.52 5.29 -320.71 -1.70 -32.22 15 10 C 0.66 31.44 8.50 179.06 1.52 32.96 15 11 O -0.66 -37.45 15.58 -3.99 -0.06 -37.51 15 12 N -0.73 -25.00 5.10 -454.39 -2.32 -27.32 15 13 C 0.17 4.90 2.83 45.71 0.13 5.03 15 14 H 0.07 2.52 7.57 -2.39 -0.02 2.50 15 15 C -0.13 -2.39 6.02 30.81 0.19 -2.21 15 16 C -0.05 -0.79 7.38 72.22 0.53 -0.25 15 17 S -0.33 -8.54 23.23 -56.49 -1.31 -9.85 15 18 C -0.07 -2.04 7.13 72.72 0.52 -1.52 15 19 H 0.27 14.07 8.31 -92.71 -0.77 13.30 15 20 H 0.40 19.17 7.91 -92.71 -0.73 18.44 15 21 H 0.41 11.17 8.31 -92.71 -0.77 10.40 15 22 H 0.10 1.48 7.67 -2.38 -0.02 1.46 15 23 H 0.10 1.65 8.14 -2.39 -0.02 1.63 15 24 H 0.12 1.55 8.14 -2.39 -0.02 1.53 15 25 H 0.12 1.41 8.14 -2.39 -0.02 1.39 15 26 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 27 H 0.08 2.89 8.14 -2.39 -0.02 2.87 15 Total: -1.00 -68.07 247.81 0.78 -67.29 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.31 Total: 28.23 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 4.17 Total: 16.17 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -3.73 Total: -109.81 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.06 Total: -37.51 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.31 Total: -9.85 kcal Total: -68.07 0.78 -67.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260833405.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.284 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds