Wall clock time and date at job start Mon Mar 30 2020 02:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31479 * 1 3 3 Si 1.86795 * 119.99904 * 2 1 4 4 H 1.48502 * 109.47419 * 269.99794 * 3 2 1 5 5 H 1.48501 * 109.47342 * 29.99852 * 3 2 1 6 6 H 1.48504 * 109.47137 * 149.99991 * 3 2 1 7 7 C 1.38879 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99763 * 359.97438 * 7 2 1 9 9 N 1.37186 * 119.99574 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99743 * 180.02562 * 9 7 2 11 11 O 1.21580 * 120.00011 * 359.97438 * 10 9 7 12 12 N 1.34779 * 119.99952 * 180.02562 * 10 9 7 13 13 C 1.46502 * 119.99834 * 179.97438 * 12 10 9 14 14 H 1.09002 * 108.83003 * 325.70211 * 13 12 10 15 15 C 1.52333 * 108.87056 * 207.17050 * 13 12 10 16 16 C 1.54259 * 112.58987 * 239.32990 * 15 13 12 17 17 S 1.83960 * 102.58106 * 24.52686 * 16 15 13 18 18 C 1.54260 * 108.86500 * 84.23468 * 13 12 10 19 19 H 0.96997 * 120.00028 * 359.97438 * 1 2 3 20 20 H 0.96996 * 120.00783 * 0.02562 * 9 7 2 21 21 H 0.96999 * 120.00009 * 359.97438 * 12 10 9 22 22 H 1.09008 * 108.86471 * 0.14522 * 15 13 12 23 23 H 1.09000 * 108.86940 * 118.50768 * 15 13 12 24 24 H 1.08996 * 110.78994 * 142.79896 * 16 15 13 25 25 H 1.08998 * 110.78338 * 266.25791 * 16 15 13 26 26 H 1.09007 * 110.78707 * 214.41649 * 18 13 12 27 27 H 1.09001 * 110.79108 * 337.86770 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.4963 2.0464 -1.4001 5 1 1.4462 2.6527 0.7000 6 1 3.5463 1.4402 0.7001 7 6 2.0092 -1.2027 0.0005 8 1 1.4691 -2.1380 0.0014 9 7 3.3810 -1.2027 0.0000 10 6 4.0549 -2.3699 0.0000 11 8 3.4470 -3.4228 0.0009 12 7 5.4027 -2.3699 0.0000 13 6 6.1352 -3.6386 0.0006 14 1 5.5730 -4.3692 0.5822 15 6 7.4921 -3.4238 0.6587 16 6 8.6671 -3.7610 -0.2822 17 16 7.9208 -3.5423 -1.9494 18 6 6.2576 -4.1445 -1.4515 19 1 -0.4850 0.8400 0.0004 20 1 3.8661 -0.3627 -0.0004 21 1 5.8877 -1.5298 -0.0004 22 1 7.5741 -2.3809 0.9652 23 1 7.5579 -4.0550 1.5450 24 1 9.4932 -3.0656 -0.1340 25 1 8.9955 -4.7902 -0.1374 26 1 6.2134 -5.2331 -1.4870 27 1 5.4843 -3.7043 -2.0811 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260833410.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:46 Heat of formation + Delta-G solvation = -24.980719 kcal Electronic energy + Delta-G solvation = -12549.632734 eV Core-core repulsion = 10240.867193 eV Total energy + Delta-G solvation = -2308.765540 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 216.067 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.20252 -36.46547 -33.92939 -32.26438 -31.36108 -28.93433 -25.42973 -24.12151 -20.55349 -19.96007 -18.68611 -17.19389 -16.24657 -16.01866 -14.90256 -14.68683 -14.27803 -13.74145 -13.48113 -12.89775 -12.78595 -12.25838 -11.86921 -11.86228 -11.74361 -11.20205 -11.07763 -10.57332 -9.99406 -9.91922 -9.59416 -9.01215 -8.57337 -8.12874 -7.71363 -6.20537 -3.73976 1.85973 2.30284 3.07795 3.12726 3.19800 3.61591 4.11007 4.18369 4.52007 4.70825 4.85198 5.07012 5.30710 5.34925 5.37962 5.49253 5.52705 5.71506 5.98879 6.06574 7.10249 7.30703 7.87860 8.34964 8.83059 9.01982 9.53166 9.94634 10.93191 Molecular weight = 216.07amu Principal moments of inertia in cm(-1) A = 0.051570 B = 0.007311 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.824810 B = 3829.171293 C = 4024.292174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.038 3.962 3 Si 0.880 3.120 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.292 4.292 8 H 0.119 0.881 9 N -0.611 5.611 10 C 0.664 3.336 11 O -0.611 6.611 12 N -0.755 5.755 13 C 0.167 3.833 14 H 0.099 0.901 15 C -0.133 4.133 16 C -0.065 4.065 17 S -0.311 6.311 18 C -0.068 4.068 19 H 0.271 0.729 20 H 0.369 0.631 21 H 0.388 0.612 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.115 -3.410 0.732 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.163 4.163 3 Si 0.707 3.293 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.421 4.421 8 H 0.137 0.863 9 N -0.254 5.254 10 C 0.365 3.635 11 O -0.492 6.492 12 N -0.413 5.413 13 C 0.058 3.942 14 H 0.117 0.883 15 C -0.173 4.173 16 C -0.213 4.213 17 S -0.086 6.086 18 C -0.218 4.218 19 H 0.082 0.918 20 H 0.202 0.798 21 H 0.221 0.779 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.122 0.878 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.754 -3.814 -0.324 17.186 hybrid contribution 0.330 1.388 0.989 1.736 sum 17.085 -2.426 0.665 17.269 Atomic orbital electron populations 1.69634 1.05409 1.27159 1.51063 1.24913 0.95452 0.97671 0.98305 0.86670 0.79573 0.84329 0.78702 1.19812 1.20374 1.19811 1.19266 0.78166 0.96597 1.48057 0.86339 1.41358 1.07293 1.04465 1.72262 1.15732 0.80587 0.85119 0.82046 1.90778 1.67347 1.30511 1.60542 1.45282 1.05309 1.07387 1.83275 1.21038 0.91916 0.87587 0.93659 0.88315 1.22329 0.91744 1.04087 0.99106 1.24121 0.99991 1.04938 0.92265 1.87988 1.14117 1.87342 1.19169 1.24810 0.94335 1.03351 0.99264 0.91823 0.79813 0.77851 0.89775 0.89722 0.87848 0.89225 0.88886 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.96 55.49 0.77 -25.73 15 2 C 0.04 1.06 5.50 -17.47 -0.10 0.97 15 3 Si 0.88 19.83 27.74 -169.99 -4.71 15.11 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.27 -5.59 6.52 56.52 0.37 -5.23 15 7 C -0.29 -8.36 10.16 -14.92 -0.15 -8.51 15 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 15 9 N -0.61 -14.72 5.10 -15.34 -0.08 -14.80 15 10 C 0.66 15.12 8.39 -86.91 -0.73 14.40 15 11 O -0.61 -16.32 15.55 5.30 0.08 -16.24 15 12 N -0.75 -12.61 4.91 -58.36 -0.29 -12.89 15 13 C 0.17 2.33 2.94 -67.61 -0.20 2.13 15 14 H 0.10 1.54 7.52 -51.93 -0.39 1.15 15 15 C -0.13 -1.33 6.09 -26.41 -0.16 -1.49 15 16 C -0.06 -0.59 7.46 37.82 0.28 -0.31 15 17 S -0.31 -4.02 23.26 -107.50 -2.50 -6.52 15 18 C -0.07 -0.95 7.08 37.82 0.27 -0.69 15 19 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 20 H 0.37 7.87 5.78 -40.82 -0.24 7.64 15 21 H 0.39 5.55 8.24 -40.82 -0.34 5.21 15 22 H 0.08 0.80 7.44 -51.92 -0.39 0.42 15 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.10 0.80 8.14 -51.93 -0.42 0.37 15 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 15 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 27 H 0.11 1.86 7.94 -51.93 -0.41 1.45 15 LS Contribution 244.04 15.07 3.68 3.68 Total: -1.00 -32.67 244.04 -6.84 -39.51 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -3.01 Total: 11.38 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.79 Total: 6.50 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.41 Total: -53.43 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.08 Total: -16.24 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal Atomic # 16 Polarization: -4.02 SS G_CDS: -2.50 Total: -6.52 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.67 -6.84 -39.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260833410.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.528 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds